Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C12
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.47 
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    29   0.62 
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    28   1.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   1.9  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   3.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   4.4  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   5.8  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   5.8  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   7.6  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.6  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   7.6  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   7.6  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 384 HQSITT-IENNTNFASIIDDYTERTTSQRV*YMIKSPWYPAYSCVIQVCTLLATLRIRWY 208
           + SIT+ ++NN+N +        RT+S    Y    PW P  S V      L++L +  +
Sbjct: 122 NSSITSKLQNNSNLSVTSSANRGRTSSVSSSYDPSFPWGPRMSSVSSGKQHLSSLSLHTH 181

Query: 207 FNHST 193
           FN S+
Sbjct: 182 FNPSS 186


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 124 SGLNKTNTAFAFSSMN-----TSVSTIKSTMIEVPPNAESCKQGTY 246
           SG+N TN+  + S MN     TS+S +  T       A SCK   Y
Sbjct: 78  SGMNMTNSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKASSCKLSMY 123



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 115 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDNT 258
           +S SG+N TN+    S MN + ST   + + +  N+ +   G  + NT
Sbjct: 63  TSMSGMNMTNSTTPMSGMNMTNSTTSMSGMNM-SNSTTSMSGMNMTNT 109


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 9/41 (21%), Positives = 26/41 (63%)
 Frame = +1

Query: 130 LNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLD 252
           L+ +  ++A  ++++  S++ S++I+     +SC + TY++
Sbjct: 269 LDPSYQSYAAKTIHSDTSSLASSIIQTGDGTQSCDESTYIE 309


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 94  KDFKETFSSDSGLNKTNTAFAFSSMNTSV--STIKSTMIEVPPNAESCKQGTYLDNTG 261
           K FKE +   S   K NT  A  +  +    S IKS  +E P +A + K    +DN G
Sbjct: 540 KSFKEVYGKFSA-EKQNTDLAEDAKISEKLDSIIKSKELETPTSATTSKLMAPMDNIG 596


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +1

Query: 13  IVFNLFICAYTAPFSVQDILDVFGSPIKDFKETFSSDSGL-NKTNTAF-AFSSMNTSVST 186
           IV  L +CA  APF++  + D+F   +K         SGL N+ +T +     +  S+S 
Sbjct: 75  IVELLRLCAPDAPFTLSQLEDIFQVILKIL-------SGLMNQESTYYPQIYEILESLSN 127

Query: 187 IKSTMIEVP-PNAE 225
           +KS ++ V  PNAE
Sbjct: 128 VKSAVLIVDLPNAE 141


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 422 FHDKISMSITTTTESNLLSGQVIRVPELE 508
           FHD +S S+T   +    SG+++R P L+
Sbjct: 610 FHDFLSKSLTVNPKQRPSSGELLRHPFLK 638


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = -1

Query: 359 ITQISRPLLMIILNVLRLNEYNI*LNHHGILHTPVLSKYVPCLQLSAFGGTSIIVLLIVL 180
           +  +SR   +I+L V  L        H  + H P  S+     +    G  S I +L ++
Sbjct: 215 LLHVSRGTAVIVLIVYVLLLVFQLKTHKHVCHDP--SEVEEETEPRILGLRSSIAMLAIV 272

Query: 179 TDVFIELNANAVLVLFNPLSDE-NVSLKSFIGL 84
           T VF+ L A+ ++   + L +E N+S K+F+GL
Sbjct: 273 T-VFVSLCADYLVGSIDQLVEEVNIS-KTFVGL 303


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 211 PPNAESCKQGTYLDNTGVCRIPW*FNHILYSLRRSTFSII 330
           P N +S   GT L +T   + PW  + + ++ +++ +S+I
Sbjct: 200 PENNDSITPGTILPSTVTVKTPW-LSVLPFNCKKNHYSVI 238


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 200 IVLLIVLTD--VFIELNANAVLVLFNPLSDENVSLKSF 93
           +++L+ +TD  +FI +  NA+LVLF  +  E   L  F
Sbjct: 105 LLVLVRMTDYWIFINILHNALLVLFPHVDTERRGLYRF 142


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 277 MVSCILLCYPSMYLA 233
           + SCIL C P +YLA
Sbjct: 30  IASCILFCCPGIYLA 44


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 271 IPW*FNHILYSLRRSTFSIIINNGREICVIFNSGYALVHV 390
           +PW   + L+SLR + +S ++    E+C +  + + ++HV
Sbjct: 400 VPWYHFYSLFSLRDTDWSALLATVPEMCAL--TFFGILHV 437


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 423 KLNATPASAWNNMHQSITTIENNTNFASIIDDYT 322
           +LNA   +  N+M  S + ++N TN  S +D  T
Sbjct: 165 ELNAAVVNLDNSMESSFSIVQNLTNKDSSVDTAT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,805
Number of Sequences: 5004
Number of extensions: 38390
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)