Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C10
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 47 2e-05
11_04_0234 + 15187065-15188241,15188316-15188494 44 2e-04
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.44
12_02_0239 - 16125105-16126025,16126966-16127415 30 1.8
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 4.1
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 4.1
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 29 5.4
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 5.4
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 28 7.1
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 28 9.4
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 46.8 bits (106), Expect = 2e-05
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 3/191 (1%)
Frame = +2
Query: 101 DVPS--IINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 271
D PS + +D VN+ AF P N + AP+Y +R +A + W+
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271
Query: 272 GAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKLI 451
G P K+V+GI GR+W L + + P+ A + G + G +SY E+ L
Sbjct: 272 GVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV-QWLA 328
Query: 452 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNLG 631
G R + ++ S +Y G WV+++ K ++ L
Sbjct: 329 ATATRGSRAVITAYDNAS--VASYV-------SVGDVWVAFDGVAVVAEKLAFAARCGLL 379
Query: 632 GVSIMDLSMDD 664
G + ++ DD
Sbjct: 380 GYFLWPVNYDD 390
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 43.6 bits (98), Expect = 2e-04
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 1/195 (0%)
Frame = +2
Query: 83 NSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW 262
++++ + + + + +D VNI F + N AD AP+Y ++D +A + W
Sbjct: 214 DTNLNYPIDDMSSSLDWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISW 267
Query: 263 IQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 439
+ G P KLV+GI GR+W L + D G P A G + G+++Y EI
Sbjct: 268 LDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA---GTKQRKSNQIGVIAYAEIE 324
Query: 440 AKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKT 619
L K + +D ++ Y + G WVS++ K +V
Sbjct: 325 EYL-------KSQSVFVTHD-NQSVADYFY-------SGDLWVSFDSAVVVQEKVEFVAK 369
Query: 620 KNLGGVSIMDLSMDD 664
L G + +S DD
Sbjct: 370 SQLLGYFLSTISFDD 384
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 8 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 133
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 8 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 133
LVR+ K + + NMQL++ V+P Y V I DI
Sbjct: 340 LVRKAKHKIRTEENMQLMVDVMPLWYEKPYIKVQRIFETCDI 381
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 8 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 133
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 290 LVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 445
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 642 MDTPPRFXVFT*LALFPAVSGSS*ETQKPPSPXSSGRRKA 523
M T P +A A GS +T PPSP GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 225 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 335
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 8 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 133
LVR+ K + ++ NMQL + +LP Y + I DI
Sbjct: 338 LVRKAKDEMMIEENMQLRVDLLPLWREKPYIKLQRIFETCDI 379
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/93 (23%), Positives = 37/93 (39%)
Frame = +2
Query: 236 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQG 415
N + +IN+W+ T G + + S + G A + G GP ++
Sbjct: 508 NGNGSINWWVNGARSTRDWASGEFVPKSSGAVSSTPSMRGTVCYVAPEYGGGGPLSERCD 567
Query: 416 LLSYPEICAKLINPNQNGKRPHLRKVNDPSKRF 514
+ SY + LI +G+RP L+ P F
Sbjct: 568 IYSYGVLLLVLI----SGRRP-LQVTASPMSEF 595
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,873,120
Number of Sequences: 37544
Number of extensions: 490832
Number of successful extensions: 1339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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