Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C09
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.2  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   3.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.0  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   6.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.8  
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    25   8.8  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.8  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.8  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 533 SPLHASSPGLPPAH 492
           SPLHA+S  LPP+H
Sbjct: 43  SPLHANSVSLPPSH 56


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 569 VLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 456
           + P++Y+R   +S + A  P  PP  +     +S++PP
Sbjct: 188 IFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPP 225


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 183 WMWNSFFYRSSNNGMCT 133
           WMWNSF   S  NG  T
Sbjct: 421 WMWNSFRGASDENGEVT 437


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 59  RRRMCV*ESIIQQTMVRTA*KVPKTVHIP 145
           R+  CV ESI    ++ T  K+P T H+P
Sbjct: 31  RKSRCVVESIGNPCLLCTQLKIPCTYHLP 59


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 217 DIALIRLMVTAPYTDFVRPICLPSLDYTQQPPADFEMYVAGW 342
           D   + +       +FV P CL  + +T+     F ++VA W
Sbjct: 43  DCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFVLHVANW 84


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 599  P*LTDPTITKVLPTSYMRGPPESPLHASSPG--LPPAHSCSLVITSASPP 456
            P + +  +  ++P S  + PP S   A++P   LPP+ S    + S +PP
Sbjct: 1487 PAVPNVPVPSMIP-SVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP 1535


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +1

Query: 271 PICLPSLDYTQQPPADFEMYVAGWGMYKQF--ISGTGLSSTVKQHVKLPYVDR 423
           P C  S  YT Q   +  +    WG+ + F    G      V + VK P V++
Sbjct: 58  PPCTFSRSYTDQKRKEIHLGSTEWGLKESFTLTRGPNRRGNVGKGVKRPMVNK 110


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 248 HRIQILYG-PSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNNTL 403
           H   +L G P V +   +RN   Q+L    P    TS   L+LV  V +N TL
Sbjct: 198 HEAVLLSGNPMVAQKRYLRNWTTQVLSIILPNYYETSPLVLSLVTEVIINTTL 250


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -1

Query: 198 VGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIILS*THILRRSFNQ----DCSSD 31
           +G  +  WN ++Y+  +N    +FG    ++     +I+  T +   S  +    + SSD
Sbjct: 253 LGFFVVFWNPYWYKMMDNPSWELFGRDQYIQCQALYLIIRLTCLYLLSCYESEILNLSSD 312

Query: 30  TVCSSEHVLR 1
           T   S+ +LR
Sbjct: 313 TNLESDFLLR 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,315
Number of Sequences: 5004
Number of extensions: 68876
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)