Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C07
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    30   0.23 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   2.2  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    26   3.8  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   5.0  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   6.6  

>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +3

Query: 282 FRPGYFKRCVRGARSEVQTARLYPVAGGN---PLSKQWVVTSGYCN-LGWILIT 431
           F P YF++ ++        ARL P+  G+   P    W+  SGY   + WI+ T
Sbjct: 429 FEPWYFRQVIKAGNKPAPEARLPPMMIGSFLFPAGIFWLAWSGYYTYVHWIVPT 482


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +3

Query: 282 FRPGYFKRCVRGARSEVQTARLYPVAGG---NPLSKQWVVTSGYCN-LGWILIT 431
           F P Y++RC+         ARL P+  G    P    W+  SGY + + WI+ T
Sbjct: 425 FEPWYYRRCLALGGKPDPEARLPPMMIGCFMFPAGIFWLSWSGYYSYVHWIVPT 478


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 279 CFRPGYFKRCVRGARSEVQTARLYPVAGGNPL 374
           CFRP  FK C++  +S+      Y    G  +
Sbjct: 272 CFRPVLFKNCLKTVKSKYGANLFYAYGPGTTM 303


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 233 RCFLLFRFY*TYRGIVF*TRIL*KMC-SGSKIRSTNSPFVPSGGGKSVVQAVG 388
           RC L+  +Y +Y+G++   RI+      G K+ S N+      G K  VQ VG
Sbjct: 245 RCLLIDSWYNSYQGVIGLVRIMEGFIKKGGKVMSVNT------GRKYEVQQVG 291


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +3

Query: 282 FRPGYFKRCVRGARSEVQTARLYPVAGG---NPLSKQWVVTSG-YCNLGWIL 425
           F P Y+++C+         ARL P+  G    P    W+  SG Y  + W++
Sbjct: 426 FEPWYYRKCLAQGGKPDPEARLPPMMIGCFMFPAGIFWLSWSGHYSYVNWVV 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,244
Number of Sequences: 5004
Number of extensions: 45384
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)