Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C07
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-1|CAA93514.1|  325|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z73911-8|CAL64005.1|  367|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z73911-7|CAA98142.2|  483|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z69664-1|CAA93514.1|  325|Caenorhabditis elegans Hypothetical
           protein K04D7.1 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
 Frame = -3

Query: 485 VNPNCHNLL*SVWTNFSPSNQDPTKVAISGSYNPL-----LGQ-RISPRHWVQTGCLYF* 324
           +  +CH    S    FSPSN+DP  V +S  ++ +     LG  R+   H   TG +   
Sbjct: 148 ITDDCHTDWVST-VRFSPSNRDP--VIVSAGWDKVVKVWNLGNCRLKTNHIGHTGYVNTV 204

Query: 323 SCSPNTSFKVSGSK 282
           + SP+ S   SG K
Sbjct: 205 TVSPDGSLCASGGK 218


>Z73911-8|CAL64005.1|  367|Caenorhabditis elegans Hypothetical
           protein T12A7.2b protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -3

Query: 452 VWTNFSPSNQDPTKVAIS-GSYNPLLGQRISPRHWVQTGCLYF*SCSPNTSFKVSGSKTL 276
           V T +   ++  T V ++ G +N  LG+ +   +WV   C++   C+     K SG   L
Sbjct: 93  VCTRWYSGDKCETPVCMNDGYFNHTLGRCVCTSNWVGEHCIF--RCNSGVVNKTSG---L 147

Query: 275 CPDTFSRI*TIK 240
           C   F R  TI+
Sbjct: 148 CECLFGRPCTIQ 159


>Z73911-7|CAA98142.2|  483|Caenorhabditis elegans Hypothetical
           protein T12A7.2a protein.
          Length = 483

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -3

Query: 452 VWTNFSPSNQDPTKVAIS-GSYNPLLGQRISPRHWVQTGCLYF*SCSPNTSFKVSGSKTL 276
           V T +   ++  T V ++ G +N  LG+ +   +WV   C++   C+     K SG   L
Sbjct: 93  VCTRWYSGDKCETPVCMNDGYFNHTLGRCVCTSNWVGEHCIF--RCNSGVVNKTSG---L 147

Query: 275 CPDTFSRI*TIK 240
           C   F R  TI+
Sbjct: 148 CECLFGRPCTIQ 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,226
Number of Sequences: 27780
Number of extensions: 253993
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)