Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C04
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 31 0.70
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 31 0.93
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 29 2.1
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 6.5
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 27 8.7
03_02_1034 + 13555569-13556084,13556096-13556527 27 8.7
01_07_0310 + 42660671-42660795,42660996-42661026,42662958-426630... 27 8.7
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373... 27 8.7
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 394 RKMLSYNQYNMDKYTYVPTALDMYTTCLRDPVF--WKIMKRVM 516
R+M+SY+ + TY+P +++ C+R+P F W++ +++M
Sbjct: 155 REMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVKEQIM 195
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -2
Query: 393 EHCHHMEHFGIVIGH-IHATEDKSGKHFHVFGFLQIDHGSI-TTFDFAC*DSFADHLLNI 220
E CH M GIV+GH + EDK + F ++ F +D I T F+ A F++ L+I
Sbjct: 468 EKCHFMVREGIVLGHRVFEREDKIMEKFIIY-FFCLDLLKIQTKFNRAYLLQFSESKLHI 526
Query: 219 I 217
I
Sbjct: 527 I 527
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 199 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM-LARLILGGMNVANDDAKMF 375
KL +LL + +QM++EG LT D + + KK D M + IL MN + +M
Sbjct: 515 KLLVLLQNGKQMVQEGALTALASVADSSQEHFKKYYDAVMPYLKAIL--MNATDKSNRML 572
Query: 376 HMMTM 390
+M
Sbjct: 573 RAKSM 577
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 406 SYNQYNMDKYTYVPTALDMYTTCLRDP-----VFWKIMKRVMNSFVLFKNMLPSYT 558
SY Y ++ + + ++ CL D VFWK + F+L K +LP Y+
Sbjct: 464 SYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFLLRKLILPFYS 519
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 406 SYNQYNMDKYTYVPTALDMYTTCLRDPV-----FWKIMKRVMNSFVLFKNMLPSYT 558
SY Y ++ + + ++ CL D + FWK + F+L K +LP Y+
Sbjct: 449 SYEAYRKQQHRWHSGPMQLFRLCLPDIIRCKIAFWKKANLIFLFFLLRKLILPFYS 504
>03_02_1034 + 13555569-13556084,13556096-13556527
Length = 315
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 247 ILTGKIERRDGTMINLK---KPEDVEMLARLILGGMNVANDDA 366
+L+G R DG ++ + P D+ L R+ L G NV D+A
Sbjct: 218 LLSGFATRSDGPELDDQLELTPRDIRRLVRMALKGKNVERDEA 260
>01_07_0310 +
42660671-42660795,42660996-42661026,42662958-42663079,
42663428-42663544,42663881-42663950
Length = 154
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 106 KNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIRE 243
K +W ++ D P N +PV + N K K QM+R+
Sbjct: 100 KVNFWRRLSQMKADHEPSASNKRLPVINHNYKSKRYATLTPQMMRQ 145
>01_01_0513 +
3736893-3737047,3737298-3737340,3737631-3737765,
3737879-3738010,3738129-3738278,3738353-3738373,
3738468-3738675,3738796-3738877,3738983-3739088,
3739245-3739358,3739458-3739685
Length = 457
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 73 DIKMFM--WNEPVKNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKM 210
D K F+ W E N WP + +P G ++Q F +K++M
Sbjct: 109 DTKAFLAAWEETCNNEGWPILIIPGGRTFLLKQIKFNGSCKSPIKIQM 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,555
Number of Sequences: 37544
Number of extensions: 323598
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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