Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C04
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical ...    31   0.63 
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    25   0.81 
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    25   0.81 
Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    28   4.5  

>AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical
           protein T20H9.6 protein.
          Length = 758

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 502 MKRVMNSFVLFKNMLPSYTREELDFPGVKVE 594
           ++ V+N  + FKN+LP+++   LD+ GV ++
Sbjct: 558 LRTVVNEVINFKNLLPAFSANLLDYGGVFIQ 588


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 25.0 bits (52), Expect(2) = 0.81
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 68  CATLKCSCGMNPSRTVIGLRSA-CPMEMRC 154
           CAT++CS G      ++    A CP    C
Sbjct: 381 CATMRCSAGTTCQEALVKCAKAPCPSHAAC 410



 Score = 24.2 bits (50), Expect(2) = 0.81
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 50  NVYHTKCATLKCSCG 94
           N+  T C+T+KCS G
Sbjct: 335 NIQITPCSTMKCSAG 349


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 25.0 bits (52), Expect(2) = 0.81
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 68  CATLKCSCGMNPSRTVIGLRSA-CPMEMRC 154
           CAT++CS G      ++    A CP    C
Sbjct: 316 CATMRCSAGTTCQEALVKCAKAPCPSHAAC 345



 Score = 24.2 bits (50), Expect(2) = 0.81
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 50  NVYHTKCATLKCSCG 94
           N+  T C+T+KCS G
Sbjct: 270 NIQITPCSTMKCSAG 284


>Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical
           protein C15A11.7 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 516 HDAFHYLPEYW 484
           HD FHY PEYW
Sbjct: 75  HDFFHYYPEYW 85


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 157 VRQNNFVPVTSENLKLKMLLD-DVEQMIREGILTGKIERRDG 279
           +R     P TS ++K+K + D D+EQM+    LT  +ER  G
Sbjct: 525 LRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILEREGG 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,841
Number of Sequences: 27780
Number of extensions: 298688
Number of successful extensions: 853
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)