Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C03
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 74 2e-14
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 48 1e-06
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 47 3e-06
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 47 3e-06
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 46 4e-06
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 42 6e-05
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 1e-04
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 40 3e-04
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 40 5e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 39 6e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 39 8e-04
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 39 8e-04
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.001
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 38 0.002
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.002
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 36 0.004
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 35 0.010
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 34 0.022
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 33 0.052
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 31 0.16
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 31 0.21
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 30 0.28
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 29 0.64
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 28 1.5
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 28 1.5
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 5.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 7.9
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 74.1 bits (174), Expect = 2e-14
Identities = 39/89 (43%), Positives = 49/89 (55%), Gaps = 20/89 (22%)
Frame = +2
Query: 26 RRAIRNMNTLYPDATQAELAAADNECIICREEM-HSG-------------------AKKL 145
R+A R+MN +YP AT+ +L +D C ICREEM H K+L
Sbjct: 267 RQATRDMNAMYPTATEEQLTNSDRTCTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRL 326
Query: 146 PCNHIFHAACLRLWFQRQQTCPTCRLNVL 232
PC HI H CLR W +RQQTCP CR +V+
Sbjct: 327 PCGHILHFHCLRNWLERQQTCPICRRSVI 355
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 92 DNECIICREEMHSG----AKKLPCNHIFHAACLRLWFQRQQTCPTCRLNV 229
D C IC ++M+ A K+PC HIF CL+ W + TCP CR V
Sbjct: 104 DLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 46.8 bits (106), Expect = 3e-06
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 77 ELAAADNECIICRE--EMHSGAKKLPCNHIFHAACLRLWFQRQQTCPTCRLNV 229
EL + EC IC E +++ +LPC H FH C++ W + TC CR V
Sbjct: 388 ELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 17 VLSRRAIRNMNTLYPDATQAELAAADNECIICREEMHSG--AKKLP-CNHIFHAACLRLW 187
V S ++ L+ A L++AD+ C+IC E +G +KL C H FH AC+ W
Sbjct: 739 VASHEDVKRSGGLFAYFDDASLSSADS-CLICLETYTNGDICRKLQACKHFFHQACIDQW 797
Query: 188 FQR-QQTCPTCRLNVLRPPARE 250
+CP CR + + A E
Sbjct: 798 LTTGNNSCPLCRAHGVTTQAEE 819
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +2
Query: 98 ECIICREEMHSGAK--KLPCNHIFHAACLRLWF-QRQQTCPTCRLNVLRP 238
EC+IC E G K LPC H FH C+ W + CPTC V P
Sbjct: 320 ECVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEVPPP 369
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 42.3 bits (95), Expect = 6e-05
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 140 KLPCNHIFHAACLRLWFQRQQTCPTCRLNVLR 235
K+PC H FH CL W + TCP CR L+
Sbjct: 53 KIPCGHYFHNHCLESWCRVANTCPLCRTEFLK 84
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 83 AAADNECIICRE--EMHSGAKKLP-CNHIFHAACLRLWF-QRQQTCPTCR 220
+ D C++C E++ ++L CNH FH C+ W Q +CP CR
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 101 CIICREEMHS---GAKKLPCNHIFHAACLRLWFQRQQTCPTCR 220
C++C E M S G + C H FH CL+ W +CP CR
Sbjct: 208 CVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVCR 248
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 39.5 bits (88), Expect = 5e-04
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 146 PCNHIFHAACLRLWFQRQQTCPTCRLNV 229
PC+H++H CL W + + CP CR ++
Sbjct: 646 PCHHLYHRQCLLQWMETRSICPVCRCHL 673
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 39.1 bits (87), Expect = 6e-04
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 101 CIICREEMHSGAKKLPCNHIFHAACLRLWFQRQQTCPTCR 220
CIICR+ + G C H++ + CL W + +CP C+
Sbjct: 1092 CIICRDIIKQGFITT-CGHLYCSFCLEAWLKHSSSCPMCK 1130
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 92 DNECIICREEMHSGAKKLPCNHIFHAACLRLWFQRQQTCPTCR 220
+ +C +C E +H A C HIF +C+ W ++ CP CR
Sbjct: 253 NRKCSLCMEFIHCPAAT-ECGHIFCWSCINGWTSKKSECPLCR 294
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 98 ECIICREEMHSGA---KKLPCNHIFHAACLRLW-FQRQQTCPTCRLNV 229
EC IC E + ++LPC+HIFH AC+ + + CP C+ +V
Sbjct: 497 ECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSV 544
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 98 ECIICREEMHSGAKKLPCNHI-FHAACLRLWFQRQQTCPTCRLNV 229
+C+IC ++ A+ PC H F +C+ W + TCP C+ +V
Sbjct: 20 DCVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKRHV 64
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +2
Query: 35 IRNMNTLYPDATQAELAAADNE--CIICREE--MHSGAKKLPCNHIFHAACLRLWFQRQQ 202
I N + D++ D E CIIC + + LPC H+FH C+ W +
Sbjct: 181 IYNTDASDGDSSDDSCLLEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMK 240
Query: 203 -TCPTC 217
+CP C
Sbjct: 241 ASCPLC 246
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 98 ECIICREEMHSGAKKLPCNHIFHAACLRLWFQRQQTCPTCRLNVLRPPA 244
EC IC E + C H + CL W + ++CPTCR + P+
Sbjct: 84 ECPICTEALQRPFTT-HCGHTYCYECLLNWLKESKSCPTCRQKLYTQPS 131
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Frame = +2
Query: 98 ECIICREEMHSGAKKLP------CNHIFHAACLRLWFQRQQT--CPTCR 220
EC IC + S + LP C H FHA+CL WF+ + CP CR
Sbjct: 1557 ECAICYSVL-SVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +2
Query: 77 ELAAADNECIICREEMHSGAKKLPCNHIFHAACLRLWFQRQQTCPTCRLNVLRPPARE 250
E + + EC IC ++ PC H F CL + CPTCR + P E
Sbjct: 161 ENVSRELECQICFGMLYDPVVS-PCGHTFCGPCLMQALTQSPQCPTCRFGLPSPVVLE 217
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 86 AADNECIICREEMHSGAKK---LPCNHIFHAACLRLWFQRQQTCPTCRLNVL 232
+ D C IC E M + ++ L C+H H C + + CPTC ++
Sbjct: 266 STDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTII 317
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 32.7 bits (71), Expect = 0.052
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 101 CIICREEMHSGAKKLPCNHIFHAACLRLWFQRQQTCPTCR 220
C+IC E + C+H F + C+R + + CP CR
Sbjct: 29 CLICHEYFRAPLIT-SCSHTFCSFCIRDYLREHPMCPACR 67
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 31.1 bits (67), Expect = 0.16
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 149 CNHIFHAACLRLWFQRQQTCP 211
CNH FH C+ W + CP
Sbjct: 74 CNHAFHFHCISRWLNTRNVCP 94
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Frame = +2
Query: 98 ECIICREEMHSGAKKLPCN---HIFHAACLRLWF-----QRQQ---TCPTCRLN 226
EC +C + ++ C H+FH +C+R W QR + CP C+ N
Sbjct: 196 ECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQSN 249
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = +2
Query: 98 ECIICREEMHSG---AKKLPCNHIFHAACLRLWFQRQQT-CP 211
ECIIC EE +G A+ C IFH C R W CP
Sbjct: 229 ECIICFEEFAAGDRVARIEYCLCIFHLKCYRDWLSTGAAGCP 270
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = +2
Query: 74 AELAAADNECIICREEMHSGAKKLP-CNHIFHAACLRLWF--QRQQTCPTC 217
A+ + +C+ C + P C HI H +CLR W+ P C
Sbjct: 780 AKTVTSLKKCVYCELPLRGVLVYPPVCGHIGHESCLRSWYFDNTDDALPVC 830
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 627 PHKLISIQEISPELKVNTEP 686
P LI ++E SP LKV+T+P
Sbjct: 39 PEHLIDLEEKSPHLKVDTQP 58
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +2
Query: 149 CNHIFHAACLRLWFQ---RQQTCPTCR 220
C HIFHA C++ W Q CP R
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPMDR 78
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = +2
Query: 47 NTLYPDATQAELAAADNECIICREEMHSGAKKLPCNHIFHAACL 178
N +YP+A +C +C + + +PC H CL
Sbjct: 728 NQIYPEAVNRLKLIETLQCSLCMDVVAELLIIVPCGHFLCRECL 771
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 41 NMNTLYPDATQAELAAADNECIICR--EEMHSGAKKLPCNHIFHAAC 175
+M LY Q L+++D + CR E+ KK+P IFH C
Sbjct: 879 HMVELYNTLLQ-RLSSSDQVDLQCRYLHELSEFIKKIPKEFIFHTIC 924
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,612
Number of Sequences: 5004
Number of extensions: 39326
Number of successful extensions: 136
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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