Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C01
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    32   0.072
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   3.6  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.3  

>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 31.9 bits (69), Expect = 0.072
 Identities = 22/49 (44%), Positives = 27/49 (55%)
 Frame = -3

Query: 233 TKLDLKEANDGIDPATYLPVAARPFALARLMSSCCPTGTLSSLPAQARS 87
           TKL+  + N  I P    P AARP    R MS+ CP    SSL A+A+S
Sbjct: 111 TKLEQSKQNKRIVPLEREPRAARPPKRPRPMSNYCPK---SSLMARAKS 156


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 366 VIRTLLFFELKFIFDIHCFV*CCYFKNSFIINYIFSFMYPRT 491
           +I  +LFF L FI  IH F    +F  + I  + F F  P T
Sbjct: 408 LILRVLFFSLLFIIGIHIFY-FLFFHVATIQQWPFLFWLPST 448


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 137 NSSSVPRRTVSQPPANTSPDLS 202
           N  S P  +  QPP NT P +S
Sbjct: 106 NVPSTPSDSTQQPPTNTLPSVS 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,301
Number of Sequences: 5004
Number of extensions: 36835
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)