Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C01
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 81 9e-16
01_06_1721 - 39426957-39428005,39428812-39428839 79 2e-15
05_04_0255 + 19462668-19462695,19463443-19464491 75 6e-14
08_01_0142 - 1121762-1122822,1123087-1123114 72 4e-13
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 69 4e-12
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 41 6e-04
12_01_0787 + 7189305-7189464,7189790-7189854 28 6.4
04_03_0851 + 20285996-20286128,20286217-20286290,20286376-202864... 28 6.4
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 80.6 bits (190), Expect = 9e-16
Identities = 36/82 (43%), Positives = 52/82 (63%)
Frame = +1
Query: 4 NLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGNEDNVPVGQQELIKRAKANGLAATGK 183
NLNA+N +++ +PW LTFS+GRALQ S ++ W G ++NV Q + R KAN A GK
Sbjct: 469 NLNAMNKLEVLKPWTLTFSFGRALQQSTIKKWGGKKENVAAAQAAFLARCKANSEATLGK 528
Query: 184 YVAGSIPSLASFKSNFVKSHAY 249
Y G+ A+ +S +VK + Y
Sbjct: 529 Y-GGAAGDAATSESLYVKGYTY 549
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = +1
Query: 1 VNLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGNEDNVPVGQQELIKRAKANGLAATG 180
VNLNA+N + K+PW L+FS+GRALQ S L+AW G +NV Q+ I R KAN A G
Sbjct: 276 VNLNAMNKLSTKKPWALSFSFGRALQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLG 335
Query: 181 KYVAGSIPSLASFKSNFVKSHAY 249
Y ++ + +S VK + Y
Sbjct: 336 TYQGDAVLGEGASESLHVKDYKY 358
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = +1
Query: 1 VNLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGNEDNVPVGQQELIKRAKANGLAATG 180
+NLNA+N + K+PW L+FS+GRALQ S L+AW+G +N+ + + R KAN A G
Sbjct: 276 LNLNAMNKLSTKKPWSLSFSFGRALQQSTLKAWSGKAENIEKARAAFLTRCKANSEATLG 335
Query: 181 KYVAGSIPSLASFKSNFVKSHAY 249
Y ++ + +S VK + Y
Sbjct: 336 TYKGDAVLGEGASESLHVKDYKY 358
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 71.7 bits (168), Expect = 4e-13
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +1
Query: 4 NLNAINSVDL--KRPWVLTFSYGRALQASVLRAWAGNEDNVPVGQQELIKRAKANGLAAT 177
NLNA+N V K+PW LTFS+GRALQ S L+AWAG +NV Q L+ R +AN A
Sbjct: 279 NLNAMNQVASRGKKPWSLTFSFGRALQQSTLKAWAGKAENVGKAQAALLARCRANSQATL 338
Query: 178 GKYVAGSIPSLASFKSNFVKSHAY 249
G Y + ++ VK + Y
Sbjct: 339 GAYAGDAAAGEGVSENLHVKDYKY 362
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 68.5 bits (160), Expect = 4e-12
Identities = 36/82 (43%), Positives = 48/82 (58%)
Frame = +1
Query: 4 NLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGNEDNVPVGQQELIKRAKANGLAATGK 183
NLNA+N PW ++FSY RALQ + L+ W G +NV Q L+ RAKAN LA GK
Sbjct: 310 NLNAMNQGP--NPWHVSFSYARALQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGK 367
Query: 184 YVAGSIPSLASFKSNFVKSHAY 249
Y + + A + FVK++ Y
Sbjct: 368 YTSDGEAAEAK-EGMFVKNYVY 388
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 4 NLNAIN-SVDLKRPWV--LTFSYGRALQASVLRAWAGNEDNVPVGQQELIKRAK 156
NLNA+N + PW ++FSY RALQ + L+ W +NV Q EL A+
Sbjct: 356 NLNAMNQAAPSANPWRWRVSFSYARALQNTCLKTWGSRRENVAAAQGELAGAAR 409
>12_01_0787 + 7189305-7189464,7189790-7189854
Length = 74
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 28 DLKRPWVLTFSYGRALQASVLRAWAGNED 114
DLK +LT Y A+++ AWA +E+
Sbjct: 32 DLKASLLLTVQYNATTTAAIVAAWAADEE 60
>04_03_0851 +
20285996-20286128,20286217-20286290,20286376-20286494,
20287169-20287252,20287974-20288079
Length = 171
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 125 LDSRNSSSVPRRTVSQPPANTSPDLSRRWLL 217
L++ NS V R + S P T+P + +RW L
Sbjct: 140 LEALNSGIVKRGSQSSPVQETTPAVRKRWFL 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,148
Number of Sequences: 37544
Number of extensions: 215387
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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