Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B24
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   3.1  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   7.2  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   9.5  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   9.5  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 351 PNVNKVNQYSESRTTPGNKGN 413
           P++NKV+Q   + TTP N GN
Sbjct: 513 PSLNKVSQEPLTATTPKNLGN 533


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 5   FDKLGTNLISESLCSEF*IRNCAGKMRGFIILSVLYLQ--STWSFAVP 142
           FD LG+NL       E  I        GFI+LS+LYL     W ++ P
Sbjct: 69  FDTLGSNLWGAGKKQELGIL----LQTGFIVLSILYLPICLVWWYSKP 112


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 74  GKMRGFIILSVLYLQSTWSFAVPQSSGVGAFAYQDSSGNRLPAFNNFQNYGG 229
           GK   FI+ ++L +   + FAV   + V   A  D  GN L + + F +  G
Sbjct: 54  GKRLNFILGAILGICGAFFFAVGDDNAVFDPATLDKFGNMLGSSDLFDDIKG 105


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = -3

Query: 167 RRHLLRMTVVR------QSSKYSGDIKHLI**NPSFCPRNCVFKTPNTMTPK 30
           R H LR+++ R       +S  S D+K +   N S  P+  V + P+T+TP+
Sbjct: 10  RYHFLRVSLTRVAHLVFANSHESNDLKMVE--NVSSTPKKGVLEDPSTLTPE 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,761
Number of Sequences: 5004
Number of extensions: 43339
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)