Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B23
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   3.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.7  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   4.9  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    25   4.9  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   8.6  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    24   8.6  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 229 DGFRGFLNFGHYHHDCD*TLKIVIYKPH 312
           D  R F+  GH HH     L +++Y  H
Sbjct: 138 DDVRSFIVAGHLHHGKSALLDLLVYYTH 165


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 317  ITKMFYKQHISYIHYFQSVL 376
            + K  Y+ H+S +H+FQ ++
Sbjct: 2697 LPKRVYQSHVSLLHHFQEIV 2716


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 159 SLCLTSWRSRLALASPTGSVPGERWLPRIPK 251
           SL   S  + L+L  P G+ PG R +P I K
Sbjct: 523 SLTAPSQPASLSLLGPPGNTPGHRNVPPILK 553


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 8   FDTFTHKKSCLKKNFASIGETLASGRYPPYTEGNL 112
           F   TH+KS + +      E +++ +  PY  GN+
Sbjct: 57  FQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNV 91


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 160 VCALPPGVRAWRWPLLRDLCLEKDGFRG 243
           V  + P   AW+ PL+RD+  E    RG
Sbjct: 641 VIYINPRTYAWQIPLIRDMVAEGYPIRG 668


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 344 ISYIHYFQSVLHSSFY 391
           I +I Y +S++HSS+Y
Sbjct: 147 IDHIDYVESLIHSSYY 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,438
Number of Sequences: 5004
Number of extensions: 36238
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)