Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_B23
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0497 + 3946179-3946322,3947274-3947342,3948733-3948829,395... 38 0.003
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435... 37 0.008
02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670 30 0.68
04_04_0660 - 27017692-27017928,27018101-27018250,27018337-270184... 29 1.6
08_01_0686 + 6049563-6050900 29 2.1
03_06_0645 - 35257045-35257113,35257332-35257394,35257486-352576... 27 6.3
01_06_1636 - 38800814-38800918,38801024-38801169,38801276-388013... 27 6.3
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 27 8.3
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 27 8.3
>12_01_0497 +
3946179-3946322,3947274-3947342,3948733-3948829,
3951827-3952033,3952149-3952264,3953189-3953293,
3953380-3953552,3953647-3953737,3953869-3954018,
3954482-3954724
Length = 464
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +2
Query: 5 TFDTFTHKKSCLKKNFASIGETLASGRYPPYTEGNLNFIKTLLR 136
+F+ F+HKK+ L + FA GE A+ RYPPY+ L ++ +L+
Sbjct: 408 SFEAFSHKKAVLVRRFA--GE--AAARYPPYSPAKLKILRGVLK 447
>11_01_0550 +
4355857-4356051,4357287-4357355,4357429-4357561,
4358248-4358454,4358601-4358716,4358814-4358918,
4359008-4359180,4359273-4359363,4359682-4359831,
4359928-4360173
Length = 494
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 5 TFDTFTHKKSCLKKNFASIGETLASGRYPPYTEGNLNFIKTLLRKRHF 148
+FD FTHKK+ L + F GE A+ RYPPYT ++ L+ F
Sbjct: 437 SFDCFTHKKAVLIRGFG--GE--ATARYPPYTIEKQKILRGLINGSFF 480
>02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670
Length = 197
Score = 30.3 bits (65), Expect = 0.68
Identities = 26/54 (48%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Frame = +3
Query: 27 RKAALRRISLPSERLWL-------PG---VTPLTQREI*ISSKP--CYARGTFP 152
RKAA RRIS E LWL PG VT L E+ I P YA GTFP
Sbjct: 33 RKAAQRRISRELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTPYAGGTFP 86
>04_04_0660 -
27017692-27017928,27018101-27018250,27018337-27018427,
27018512-27018672,27018783-27019015,27019119-27019325,
27021411-27021507,27021636-27021677,27021802-27022056
Length = 490
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 5 TFDTFTHKKSCLKKNFASIGETLASGRYPPYTEGNLNFIKTLLR 136
+F+ F+HKK+ L + + + E A RYPP+ + ++ ++ L R
Sbjct: 436 SFEMFSHKKAVLTRGY--LIELTA--RYPPWDDSKISMMRQLYR 475
>08_01_0686 + 6049563-6050900
Length = 445
Score = 28.7 bits (61), Expect = 2.1
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +1
Query: 124 NPVTQEALSLAEVCALPPGVRAWRWPLLRDLCLEKDGFRGF 246
+P Q AL L VC L G PL D C EKDG RG+
Sbjct: 153 SPAPQNALHLC-VCNLLTGSHDVLPPLPMD-CFEKDGARGY 191
>03_06_0645 -
35257045-35257113,35257332-35257394,35257486-35257623,
35257987-35258056,35258218-35258361,35258523-35258641,
35258958-35259062,35259301-35259505,35259620-35260140
Length = 477
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 165 CLTSWRSRLALASPTGSVPGER-WLPRIPK 251
CL + R+ ++PTGSV ER LPR P+
Sbjct: 190 CLVHYFDRVTASTPTGSVSFERKVLPRRPE 219
>01_06_1636 -
38800814-38800918,38801024-38801169,38801276-38801381,
38801609-38801686,38801786-38801839,38801920-38801992,
38802059-38802183,38802268-38802357,38802447-38802526,
38802869-38802995,38803145-38803227,38803575-38803710
Length = 400
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 174 SWRSRLALASPTGSVPGERWL 236
SW+ R LA P GS PG+ WL
Sbjct: 280 SWQIRDTLA-PVGSYPGQSWL 299
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 26 KKSCLKKNF-ASIGETLASGRYPPYTEGNLNFIKTLLRKRHFPSL 157
+K LK ++ ASIGE L G + + E L F ++ FPS+
Sbjct: 465 EKEYLKPSYTASIGEELEDGLFDDFLELTLQFGMIMMFACAFPSI 509
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 88 PPLHRGKSEFHQNPVTQEALSLAEVCALP 174
PP++ SEFH + E L L V +LP
Sbjct: 889 PPMYLQPSEFHHMCLRHEVLELENVNSLP 917
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,721
Number of Sequences: 37544
Number of extensions: 236983
Number of successful extensions: 639
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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