Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B23
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   4.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 86  YPPYTEGNLNFIKTLLRKRHFP-SLKF 163
           +PP T G+ NF    L   H P S+KF
Sbjct: 301 FPP-TPGSFNFSMAALATEHTPLSVKF 326


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 48  ISLPSERLWLPGV 86
           + +PSE +WLP +
Sbjct: 95  LHVPSEHIWLPDI 107


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 54  LPSERLWLPGV 86
           +PSE +WLP +
Sbjct: 97  VPSEHIWLPDI 107


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 54  LPSERLWLPGV 86
           +PSE +WLP +
Sbjct: 110 VPSENIWLPDI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,096
Number of Sequences: 438
Number of extensions: 2747
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)