Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B22
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    30   0.21 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.1  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.1  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   1.5  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   1.9  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.5  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.9  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   7.8  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   7.8  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   7.8  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +1

Query: 268 LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEI 447
           L IF+K  +++ ++  FES  K+  FH ++        W++  D   EEV  D+QR   +
Sbjct: 247 LQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDF--EEVEGDFQRICHL 304

Query: 448 VARPCARCS 474
             R    C+
Sbjct: 305 YERCLITCA 313


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +2

Query: 41   LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 151
            LSI+ AK  TI  +  +  + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 262 RFLDIFEKTFVQSLQKGKFESYG-KKID-FHDEKA 360
           +FL+I+ +T +  L  G  E  G KK++ +HD KA
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKA 640


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +2

Query: 281 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLGH 460
           K+L +    K  +   + +  +T+ R+  L +T  +   +C K+  + I  DL+  SL  
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTC 257

Query: 461 VLGAALKHRRGSTSTPSCPVRLTFT 535
                L+     TS+ S PV L  T
Sbjct: 258 FASDILQTVPEYTSSQSSPVLLPAT 282


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 181 LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 273
           L+ SYY PF    DN  ++ V  YEA +  +
Sbjct: 20  LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 127 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 219
           G  P+  +Y P +  YYP   +Y  P   +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 70  NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 240
           NFY  +    YF   T G+ S+P F   +      YP   S Y P    P   ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 280 EKTFVQSLQKGKFESYGKKIDFHDEKAIN 366
           EKT V+S+ K +  + G   DFH E A N
Sbjct: 12  EKTHVESIVKFEDSNRGTITDFHIETANN 40


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 421 KDYQRSYEIVARPCARCSTKTSKGFD 498
           K +   Y+   RPC RC+ +  + +D
Sbjct: 145 KCHNTGYKDSGRPCGRCARRFGRSYD 170


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +1

Query: 1   HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 159
           H  FWWS  +  NL     E+   NF   L     FE   N +    EFS  SP
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -1

Query: 219 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 91
           RP +  ++V SH+ I+++L +     RVP    YG     KT  ++ C
Sbjct: 30  RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,788
Number of Sequences: 5004
Number of extensions: 51722
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)