Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_B22
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 2.4
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 2.4
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 29 2.4
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 29 2.4
U58757-2|AAC47915.2| 402|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 28 5.4
Z82278-9|CAE17877.1| 323|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z82070-8|CAE17980.1| 323|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical ... 27 7.2
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 281 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLGH 460
KR+ N+ R ++ + +M+ L +ET K + +KKKL+ INDL +++L H
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL-EIALDH 1644
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 281 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLGH 460
KR+ N+ R ++ + +M+ L +ET K + +KKKL+ INDL +++L H
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL-EIALDH 1644
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 349 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 263
RG+++ C + CL V T+R +KC T
Sbjct: 43 RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 349 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 263
RG+++ C + CL V T+R +KC T
Sbjct: 35 RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63
>U58757-2|AAC47915.2| 402|Caenorhabditis elegans Hypothetical
protein C01B10.3 protein.
Length = 402
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 229 NLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 408
NL+ KN+ I++ D F T +++ G S G + D N G + D Y
Sbjct: 93 NLYLFKNHSDIQYYDRFSSTGYINVRSGHQHSIGS--NECDGFIQNTFGQNYTFRRDFYN 150
Query: 409 EEVTKDY--QRSYEIVAR 456
++ T+D QR+ ++AR
Sbjct: 151 DDGTRDLANQRTGFLLAR 168
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 346 HDEKAINFVGNYWQENADLYEEEV 417
HDE A+N Y+Q + DL E++V
Sbjct: 75 HDELAVNNADEYFQGDVDLSEQQV 98
>Z82278-9|CAE17877.1| 323|Caenorhabditis elegans Hypothetical
protein W04E12.9 protein.
Length = 323
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 172 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 351
Y P + S + F P ++NL+ + F+ T + + +K K E++ ++ H
Sbjct: 3 YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58
Query: 352 EK 357
+
Sbjct: 59 HR 60
>Z82070-8|CAE17980.1| 323|Caenorhabditis elegans Hypothetical
protein W04E12.9 protein.
Length = 323
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 172 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 351
Y P + S + F P ++NL+ + F+ T + + +K K E++ ++ H
Sbjct: 3 YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58
Query: 352 EK 357
+
Sbjct: 59 HR 60
>AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical
protein K03H6.2 protein.
Length = 348
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 1 HLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYY 102
HLPF + + + H R EI+YN + + Y+
Sbjct: 264 HLPFQYELVDHDKMYHHRTEIWYNNDMSIGSSYH 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,791
Number of Sequences: 27780
Number of extensions: 282965
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -