Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B20
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   142   2e-35
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   142   2e-35
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   0.71 
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    28   0.71 
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.0  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   5.0  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  142 bits (345), Expect = 2e-35
 Identities = 68/103 (66%), Positives = 77/103 (74%)
 Frame = -1

Query: 390 NDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 211
           NDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAMLAAQD A KCK +GITALHIK+
Sbjct: 26  NDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKI 85

Query: 210 RAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 82
           RA           GAQ          M+IGRIEDVTP+P+DST
Sbjct: 86  RATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128



 Score = 27.5 bits (58), Expect = 0.93
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -3

Query: 427 IVFGVAHIFASF 392
           +VFGVAHIFASF
Sbjct: 14  LVFGVAHIFASF 25


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  142 bits (345), Expect = 2e-35
 Identities = 68/103 (66%), Positives = 77/103 (74%)
 Frame = -1

Query: 390 NDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 211
           NDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAMLAAQD A KCK +GITALHIK+
Sbjct: 26  NDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKI 85

Query: 210 RAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 82
           RA           GAQ          M+IGRIEDVTP+P+DST
Sbjct: 86  RATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128



 Score = 27.5 bits (58), Expect = 0.93
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -3

Query: 427 IVFGVAHIFASF 392
           +VFGVAHIFASF
Sbjct: 14  LVFGVAHIFASF 25


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 351 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 250
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 265 GCC*EM*NPGDNCP 224
           GCC +  +PGDNCP
Sbjct: 33  GCCPQCTSPGDNCP 46


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 229 SYPQGFTFLSNILCSQHSGVG*SLITISLHFHASGNTG 342
           S+P     LS+ +  QH G+  SL++  +++  S   G
Sbjct: 415 SFPAATLMLSDFVPKQHQGIAASLVSTVVNYSISIGLG 452


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 139 TSESTESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILCSQHSGVG 291
           TSE  +   G+ + S  L   +   L+     P G T  ++   SQ+SG G
Sbjct: 108 TSEDEDDYHGSANSSTVLPPRTENALHAASPKPSGSTGYTSPALSQNSGSG 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,018
Number of Sequences: 5004
Number of extensions: 30458
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)