Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_B20
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 149 1e-36
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 136 7e-33
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 127 4e-30
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 8e-07
04_01_0296 + 3927741-3927960,3928257-3928900 28 3.7
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 27 4.9
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 27 8.5
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 27 8.5
05_01_0248 - 1864092-1864204,1864570-1864608,1864661-1864730,186... 27 8.5
03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148... 27 8.5
02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139 27 8.5
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 149 bits (360), Expect = 1e-36
Identities = 72/103 (69%), Positives = 80/103 (77%)
Frame = -1
Query: 390 NDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 211
NDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKL
Sbjct: 60 NDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKL 119
Query: 210 RAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 82
RA GAQ MKIGRIEDVTPVP+DST
Sbjct: 120 RATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 162
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 424 VFGVAHIFASF 392
VFGVAHIFASF
Sbjct: 49 VFGVAHIFASF 59
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 136 bits (329), Expect = 7e-33
Identities = 72/114 (63%), Positives = 80/114 (70%), Gaps = 11/114 (9%)
Frame = -1
Query: 390 NDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 211
NDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKL
Sbjct: 38 NDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKL 97
Query: 210 RAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRI-----------EDVTPVPSDST 82
RA GAQ MKIGRI EDVTPVP+DST
Sbjct: 98 RATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVLSIFCHTEDVTPVPTDST 151
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 424 VFGVAHIFASF 392
VFGVAHIFASF
Sbjct: 27 VFGVAHIFASF 37
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 127 bits (306), Expect = 4e-30
Identities = 62/92 (67%), Positives = 69/92 (75%)
Frame = -1
Query: 390 NDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 211
NDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKL
Sbjct: 37 NDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKL 96
Query: 210 RAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRI 115
RA GAQ MKIGRI
Sbjct: 97 RATGGNKTKTPGPGAQSALRALARSGMKIGRI 128
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 424 VFGVAHIFASF 392
VFGVAHIFASF
Sbjct: 26 VFGVAHIFASF 36
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 8e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 336 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 244
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 336 VTGGMKVKADRDEASPYAAMLAAQDVA 256
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>04_01_0296 + 3927741-3927960,3928257-3928900
Length = 287
Score = 27.9 bits (59), Expect = 3.7
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 40 KKLQPASSSSTLPAC--GVRRHRGHIFNAANLHAGTSESTESRLGTRSRSLCLVTSSRTE 213
+K + SSSST C V R G + LHA TSES ++ R+ + L+T S +
Sbjct: 215 RKEREGSSSSTPCRCMRQVGRQLGMRPDGPKLHATTSESQAGQVPVRTGGVHLMTYSGGQ 274
Query: 214 LNVQ 225
+Q
Sbjct: 275 PTLQ 278
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 422 IRGGTHIRLLQMTHSCTLPICPVEKLLPVLPEA 324
+R H ++ M HS +P+ +E+ LP+L ++
Sbjct: 351 VRPSHHFQIASMAHSINVPLSLLEEKLPLLRDS 383
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 47 YSLRPLRPPFLRVESDGTGVTSSMRPI 127
Y LRP PFLR +S G SS+ I
Sbjct: 1712 YFLRPKMKPFLRSDSTGHSADSSINHI 1738
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 139 TSESTESRLGTRSRSLCLVTS 201
TS S + R+GTRSRS +V S
Sbjct: 778 TSSSRDRRIGTRSRSSVMVNS 798
>05_01_0248 -
1864092-1864204,1864570-1864608,1864661-1864730,
1864976-1865043,1866114-1866201,1866282-1866309,
1866406-1866451,1866571-1866796
Length = 225
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 52 PASSSSTLPACGVRRHRGHIFNAANLHAGTSESTESRLGTRSRS 183
PA++++ +CGV RH H A+ T+ +T SRL SRS
Sbjct: 4 PATAAAAAASCGVLRH--HHPPASPRPPPTTTTTTSRLLLASRS 45
>03_05_0377 +
23613181-23613342,23614469-23614501,23614606-23614879,
23615105-23615585,23616174-23616846
Length = 540
Score = 26.6 bits (56), Expect = 8.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 193 QDKDSWTWCPVCSPCSRSFQ 134
+D DS WCP C R+ Q
Sbjct: 214 EDNDSVKWCPSAPHCGRAIQ 233
>02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139
Length = 172
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 206 ARSLMCRAVIPRVLHFSATSCAANIAA 286
A +L+CR PR+LH A CAA +A+
Sbjct: 131 ATTLLCR---PRLLHLRADVCAAALAS 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,998,691
Number of Sequences: 37544
Number of extensions: 232585
Number of successful extensions: 674
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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