Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B20
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   147   3e-36
Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U80451-11|AAB37845.2|  206|Caenorhabditis elegans Glutathione s-...    27   4.3  
U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying defe...    27   4.3  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    27   4.3  
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe...    27   4.3  
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.     27   4.3  
Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine re...    27   7.5  
AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  147 bits (357), Expect = 3e-36
 Identities = 72/103 (69%), Positives = 78/103 (75%)
 Frame = -1

Query: 390 NDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 211
           NDTFVH+TD+SGRETI RVTGGMKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKL
Sbjct: 39  NDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKL 98

Query: 210 RAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 82
           RA           GAQ          MKIGRIEDVTP+PSD T
Sbjct: 99  RATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -3

Query: 427 IVFGVAHIFASF 392
           ++FGVAHIFASF
Sbjct: 27  LIFGVAHIFASF 38


>Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical
           protein T22A3.6 protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 151 TESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILCSQ 276
           TESRL   + + C++ + R  + V+ SY +   F +  L S+
Sbjct: 487 TESRLFMNTEASCMLLNRRNSVEVKNSYKESPFFTNEKLVSE 528


>U80451-11|AAB37845.2|  206|Caenorhabditis elegans Glutathione
           s-transferase protein 6 protein.
          Length = 206

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 205 RTELNVQGSYPQGFTFLSNILCSQHSG--VG*SLITISL 315
           RT++ V  ++ + F F  NIL S HSG  VG SL  + L
Sbjct: 121 RTDVFVP-AFKKNFEFFENILASNHSGFFVGNSLTWVDL 158


>U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying
           defective protein 27,isoform c protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 141 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 239
           ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 408 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 440


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
            protein 27,isoform b protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 141  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 239
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 920  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 952


>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
            protein 27,isoform a protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 141  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 239
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 925  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957


>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 141  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 239
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 925  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957


>Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical
           protein T20F10.5 protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 320 FMPPVTRAIVSRPDRSVTCTNVSF 391
           F+PPVT+ ++S PD +V    V F
Sbjct: 413 FLPPVTQIVLSSPDLAVRQLAVDF 436


>AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 71 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 190 LVTSSRTELNVQGSYPQGFTFLSNILCSQHSGV 288
           LVT+    +++Q     GF+ ++NILCS  +G+
Sbjct: 159 LVTTFYPTIDLQNYTLSGFSDVTNILCSTATGI 191


>AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical
           protein Y45G12C.9 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 190 LVTSSRTELNVQGSYPQGFTFLSNILCSQHSGV 288
           LVT+    +++Q     GF+ ++NILCS  +G+
Sbjct: 159 LVTTFYPTIDLQNYTLSGFSDVTNILCSTATGI 191


>Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical
           protein C54G4.2 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 348 TIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 250
           T  ++  G+ ++  RD+ +PY  M A QD +EK
Sbjct: 260 TTGKMDDGI-IEESRDQLNPYDTMAALQDRSEK 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,778,640
Number of Sequences: 27780
Number of extensions: 188443
Number of successful extensions: 479
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)