Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_B18
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 111 6e-26
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 69 4e-13
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 48 6e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 46 3e-06
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 45 6e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 1e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 43 2e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 43 3e-05
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 42 7e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 40 3e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 39 5e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 39 5e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 38 7e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 38 9e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 38 0.001
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 37 0.002
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 37 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.008
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 32 0.043
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 32 0.043
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 30 0.17
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 28 0.70
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 1.6
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 4.9
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 25 6.5
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 6.5
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme... 25 6.5
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 25 8.6
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 111 bits (267), Expect = 6e-26
Identities = 50/80 (62%), Positives = 64/80 (80%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYH 445
+L AK ++LAFLIP ++++Y LKFKP NGTGVII+SPTREL++Q FGV EL+KYH
Sbjct: 129 VLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYH 188
Query: 446 HHTYGLVMGGANRSTEAQKL 505
H T+G+V+GGANR EA KL
Sbjct: 189 HQTFGIVIGGANRRAEADKL 208
Score = 63.7 bits (148), Expect = 2e-11
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +1
Query: 139 QKFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+KFS L+ + E IK+MGF TMTEIQ ++IPPLL GRD++GA +TGSGK
Sbjct: 89 EKFSDLQ--LSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGK 139
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 68.9 bits (161), Expect = 4e-13
Identities = 30/81 (37%), Positives = 54/81 (66%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYH 445
+L AK ++LAF++P ++ +Y K+ +G G +++SPTREL++QTF L+++ + H
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLH 138
Query: 446 HHTYGLVMGGANRSTEAQKLS 508
+ GL++GG N E ++LS
Sbjct: 139 SFSAGLIIGGNNYKEEKERLS 159
Score = 51.6 bits (118), Expect = 7e-08
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +1
Query: 172 EPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+PT +K+ F T+TEIQ + IP L+GRD++GA +TGSGK
Sbjct: 48 QPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGK 89
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 48.4 bits (110), Expect = 6e-07
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +1
Query: 175 PTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
P L G+ ++GF T+IQ K IP L G+D+VGA TGSGK
Sbjct: 269 PILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Score = 39.9 bits (89), Expect = 2e-04
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 296 RSLAFLIPAMD-LIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMG 472
++ AF++P ++ L+Y K P T V+IL PTREL+MQ V ++ + L +G
Sbjct: 309 KTAAFIVPILERLLYRPKKVPT--TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIG 366
Query: 473 GANRSTEAQKL 505
G + + Q+L
Sbjct: 367 GLSLKLQEQEL 377
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 46.0 bits (104), Expect = 3e-06
Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 142 KFSSLEDKVCEPTLM-GIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
K S+ + TL+ I GF T IQ K IP LLEGRD+VG +TGSGK
Sbjct: 67 KASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGK 119
Score = 34.7 bits (76), Expect = 0.008
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKPGNG-TGVIILSPTRELSMQTFGVLMELMKYHHHT 454
A+ ++ AF+IP +I +LK N T +ILSP REL++QT V+ + K
Sbjct: 113 ARTGSGKTAAFVIP---MIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLR 169
Query: 455 YGLVMGGANRSTEAQKLS 508
++GG + + LS
Sbjct: 170 SVAIVGGVSLEEQFSLLS 187
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 45.2 bits (102), Expect = 6e-06
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 178 TLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
T+ I +G+ T IQA+AIP + GRD++G +TGSGK
Sbjct: 429 TISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGK 468
Score = 36.7 bits (81), Expect = 0.002
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLK-FKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHT 454
AK +++AFL+P I + + K G G II++PTREL++Q F +K +
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
Query: 455 YGLVMGGA 478
GGA
Sbjct: 522 ACCAYGGA 529
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +1
Query: 160 DKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
D++CE + +GF T T IQ +AIP +L RD++G QTGSGK
Sbjct: 55 DELCE----ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGK 96
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 43.2 bits (97), Expect = 2e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKY 442
L+V A ++LA+L+P D + + G G +I++PTREL+ Q F V EL+ Y
Sbjct: 41 LVVEAVTGSGKTLAYLLPCFDKVTR-RDTDETGLGALIVAPTRELATQIFNVTKELLAY 98
Score = 38.7 bits (86), Expect = 5e-04
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +1
Query: 202 GFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPGLPYTCY 324
GF MT +QA AIP L+ +DLV TGSGK C+
Sbjct: 20 GFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG 306
L IK G+T T +Q +IP + GRDL+ QTGSGK G
Sbjct: 181 LQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAG 222
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 41.5 bits (93), Expect = 7e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
L +K +GF T IQ +A P + GRD+VG TGSGK
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGK 172
Score = 31.9 bits (69), Expect = 0.057
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 296 RSLAFLIPAMDLIYNLKF-KPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMG 472
++L++ +PA+ I PG+G V++L+PTREL++Q + K V G
Sbjct: 172 KTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYG 231
Query: 473 GANRSTEAQKL 505
G R + + L
Sbjct: 232 GVPRGPQIRDL 242
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.5 bits (88), Expect = 3e-04
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 124 GILSDQKFSSLEDKVCEPTLM-GIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
GI + + D +P L I F T +Q++ IP LEG+DLV +TGSGK
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGK 64
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 38.7 bits (86), Expect = 5e-04
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 136 DQKFSSLEDKVCEPTLM-GIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
D+ + +D +P L+ GI GF + IQ +AI P+L RD++ Q+G+GK
Sbjct: 15 DEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGK 69
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 38.7 bits (86), Expect = 5e-04
Identities = 24/74 (32%), Positives = 44/74 (59%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHTY 457
A+ +++AF IPA+ + L + V+++SPTREL++QT+ L L++ +
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNK-SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKA 267
Query: 458 GLVMGGANRSTEAQ 499
+V GGA +S +A+
Sbjct: 268 VVVYGGAPKSEQAR 281
Score = 36.3 bits (80), Expect = 0.003
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 217 TEIQAKAIPPLLEGRDLVGAGQTGSGKKP--GLPYTCYGSNL 336
T IQA P LL GRD+VG +TGSGK G+P Y + L
Sbjct: 189 TPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGL 230
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 38.3 bits (85), Expect = 7e-04
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 148 SSLED-KVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
SS E+ + E L GI G+ T + +Q++AI + +GRD++ Q+G+GK
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGK 71
Score = 30.3 bits (65), Expect = 0.17
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 365 TGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKL 505
T +ILSPTREL++Q V++ L + + +GG + + +KL
Sbjct: 90 TQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKL 136
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 37.9 bits (84), Expect = 9e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
LMGI + GF + IQ ++IP L GRD++ + G+GK
Sbjct: 56 LMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 37.5 bits (83), Expect = 0.001
Identities = 25/81 (30%), Positives = 42/81 (51%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYH 445
+L RAK ++ AF+IP+++ + K K +IL PTREL++QT V L K+
Sbjct: 84 ILARAKNGTGKTAAFVIPSLEKVDTKKSK----IQTLILVPTRELALQTSQVCKTLGKHM 139
Query: 446 HHTYGLVMGGANRSTEAQKLS 508
+ + GG + +L+
Sbjct: 140 NVKVMVTTGGTTLRDDIIRLN 160
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+K + + + IQ AIP LL+ +DL+G +TGSGK
Sbjct: 264 LKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGK 299
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 151 SLEDKVCEPTLM-GIKDMGFTTMTEIQAKAIPPLLEG--RDLVGAGQTGSGKKPGLPYT 318
S E+ +P L+ GI M F ++IQ KA+P LL R+++G Q+G+GK T
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALT 173
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 374 IILSPTRELSMQTFGVLMELMKY 442
I L+P+REL+ Q V+ E+ KY
Sbjct: 188 ICLAPSRELARQIMDVVTEMGKY 210
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 130 LSDQKFSSLEDKVCEPTLMG-IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+S+ S D P L+ +K + T+IQ I +LEGR+ +G +TGSGK
Sbjct: 1 MSEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGK 57
Score = 28.3 bits (60), Expect = 0.70
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHTY 457
AK ++ AF +P I K +G +IL+PTREL++Q L + +
Sbjct: 51 AKTGSGKTAAFALP----IIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKH 106
Query: 458 GLVMGGANRSTEAQKLS 508
L++GG + ++ LS
Sbjct: 107 ALIVGGMDMIRQSIDLS 123
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 34.7 bits (76), Expect = 0.008
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +2
Query: 260 EILLVRAKLAPERSLAFLIPAMDLIYNLKFKPG-NGTGV--IILSPTRELSMQTF 415
E +V+AK ++LAFL+ A + LK KP N + + +ILSPTREL++Q F
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDV--LKGKPRLNSSKIHSVILSPTRELALQIF 129
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 32.3 bits (70), Expect = 0.043
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+K T T IQ AIP + RDL+ TGSGK
Sbjct: 61 LKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGK 96
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTF 415
LL A +++A+L P ++ L+ G II++PTREL Q +
Sbjct: 86 LLACAPTGSGKTIAYLFP---ILQKLQLHVPGGYRAIIVAPTRELCEQIY 132
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 32.3 bits (70), Expect = 0.043
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 175 PTLMG-IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
P ++G + GF+ IQ+ IP G D++G TGSGK
Sbjct: 131 PEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGK 172
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 30.3 bits (65), Expect = 0.17
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +2
Query: 272 VRAKLAPERSLAFLIPAMDLIYNLK---FKPGNGTGVIILSPTRELSMQTFGVLMELMK- 439
+ A+ ++LA+L+P + + L +G +I++PTREL Q + V +L
Sbjct: 183 IEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNN 242
Query: 440 --YHHHTYGLVMGGANRSTEAQKL 505
H V+GG + +E ++
Sbjct: 243 PLSHWIVSCNVIGGEKKKSEKARI 266
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 0.70
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 364 YWCNHIVSDKRVIDANLRSANG-IDEISPSY 453
YWCNH+ S I R A G D + PS+
Sbjct: 118 YWCNHLYSQLAAIKTPSRPAFGEFDLLPPSF 148
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 148 SSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLV 270
+SL D CE T+ + F TE++ P L +G++++
Sbjct: 1064 NSLADFSCEETIALLSAFVFDEKTEVEPTISPHLQKGKEMI 1104
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 452 YDGDISSIPLALRRFAS 402
+DG + +IP ALR FAS
Sbjct: 319 FDGGLQAIPKALREFAS 335
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 228 LYFCHCCESHIFYTHQSWFTHFIFQR 151
L FC C++ I HQ H + QR
Sbjct: 272 LQFCKVCKNRILVEHQDTEFHLLKQR 297
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 273 CGPNWLRKEAWPSLYLLWI*FITL 344
CG +W R E WP L F +L
Sbjct: 422 CGMSWFRNEYWPLFIYLPAIFASL 445
>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
Spe2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 257 VEILLVRAKLAPERSLAFLIPAMDLI 334
+E+L+ ++PERSL F P++D++
Sbjct: 197 LEVLMT--DMSPERSLQFYAPSLDVV 220
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.6 bits (51), Expect = 8.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 145 FSSLE-DKVCEPTL--MGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPGLPY 315
F +L+ D + EP L I + T ++QA + + R + G G K L Y
Sbjct: 3 FRTLDVDSITEPVLTEQDIFPIRNETAEQVQAAVSQLIPQARSAIQTGNALQGLKTLLSY 62
Query: 316 TCYGSNL 336
YG+++
Sbjct: 63 VPYGNDV 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,656
Number of Sequences: 5004
Number of extensions: 38623
Number of successful extensions: 119
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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