Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B18
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       40   1e-05
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
           L  IK  G+   T +Q  A+P ++ GRDL+   QTGSGK
Sbjct: 208 LDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGK 246



 Score = 24.2 bits (50), Expect = 0.79
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 371 VIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLS 508
           V+I+SPTREL++Q +  +++          +  GG +   +  KLS
Sbjct: 276 VVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLS 321


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 321 AGIRKARLLSGASLARTNKISTLQQRRYSFCLYFCHCCE 205
           +G R   ++S AS AR+ +      R  + C   CHCC+
Sbjct: 717 SGPRGVAIVS-ASTARSEQFLC---RYEAHCFALCHCCD 751


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 239 IAFACISVI--VVNPISFIPIRVGSH 168
           IA A I+V+  +   ISF+PI +G H
Sbjct: 141 IAVAGIAVVWLLAGLISFVPISLGLH 166


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 227 CISVIVVNPISFIPIR 180
           C+ V   N I F+P++
Sbjct: 503 CVGVFTFNIIKFVPVK 518


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 227 CISVIVVNPISFIPIR 180
           C+ V   N I F+P++
Sbjct: 556 CVGVFTFNIIKFVPVK 571


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 278 PAPTRSLPSNNGGIAFACISVIVVNPISFIPI-RVGSHTLSS 156
           P   +++P N    A   I ++ + P+  +P+ +V   T+ S
Sbjct: 767 PPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTILS 808


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 275  APTRSLPSNNGG 240
            AP R LP  NGG
Sbjct: 1560 APARELPDVNGG 1571


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 108  LQLMPGYIIRSEVFISGR*SV*TNSDGYKR 197
            ++ +PG   + EVF++G   V + +  Y++
Sbjct: 1517 IKFVPGTTSQPEVFVNGEKIVVSRNKAYQK 1546


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 308 RPGFFPEPVWPAPT 267
           R G  P PV P PT
Sbjct: 152 RGGSLPTPVTPTPT 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,652
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)