Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_B18
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 96 1e-20
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 88 4e-18
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 68 3e-12
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 5e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 45 3e-05
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 45 3e-05
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 45 3e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 3e-05
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 44 6e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 1e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 43 1e-04
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 43 1e-04
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 43 1e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 42 2e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 42 2e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 42 2e-04
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 41 4e-04
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 41 4e-04
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 41 4e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 41 6e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 41 6e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 41 6e-04
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 40 7e-04
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 40 7e-04
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 40 7e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 40 0.001
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 0.001
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 39 0.002
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 39 0.002
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 39 0.002
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 39 0.002
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 39 0.002
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 39 0.002
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 38 0.004
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 38 0.004
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 38 0.004
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 38 0.004
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 38 0.005
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 37 0.007
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 36 0.012
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 36 0.012
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 36 0.012
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 36 0.012
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 36 0.012
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 36 0.016
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 36 0.021
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 35 0.027
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 35 0.027
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 35 0.027
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 34 0.048
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 34 0.048
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 34 0.063
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 33 0.084
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.084
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.11
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.11
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 31 0.34
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 31 0.45
At3g57570.1 68416.m06410 expressed protein 30 1.0
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ... 29 1.8
At1g19000.2 68414.m02364 myb family transcription factor similar... 27 5.5
At1g19000.1 68414.m02363 myb family transcription factor similar... 27 5.5
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 27 7.3
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 27 7.3
At1g79760.1 68414.m09306 expressed protein 27 9.6
At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containi... 27 9.6
At1g23760.1 68414.m02998 BURP domain-containing protein / polyga... 27 9.6
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 95.9 bits (228), Expect = 1e-20
Identities = 43/83 (51%), Positives = 62/83 (74%)
Frame = +2
Query: 260 EILLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMK 439
E +L A+ ++LAFLIPA++L+Y +KF P NGTGV+++ PTREL++Q++GV EL+K
Sbjct: 192 EDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLK 251
Query: 440 YHHHTYGLVMGGANRSTEAQKLS 508
YH T G V+GG R TEA+ L+
Sbjct: 252 YHSQTVGKVIGGEKRKTEAEILA 274
Score = 62.9 bits (146), Expect = 1e-10
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = +1
Query: 127 ILSDQKFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
I++++ F SL + + T IK+MGF MT+IQAKAIPPL+ G D++GA +TGSGK
Sbjct: 150 IMTNKTFESLS--LSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGK 204
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 87.8 bits (208), Expect = 4e-18
Identities = 39/81 (48%), Positives = 60/81 (74%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYH 445
+L A+ ++LAFLIPA++L++ +F P NGTGVI++ PTREL++QT V EL+K+H
Sbjct: 129 VLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHH 188
Query: 446 HHTYGLVMGGANRSTEAQKLS 508
T +V+GG NR +EAQ+++
Sbjct: 189 SQTVSMVIGGNNRRSEAQRIA 209
Score = 63.3 bits (147), Expect = 9e-11
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = +1
Query: 124 GILSDQKFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
GI+++ F SL+ + E T + IK+MGF MT+IQA +I PLLEG+D++GA +TGSGK
Sbjct: 84 GIMTNVTFDSLD--LSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGK 139
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 68.1 bits (159), Expect = 3e-12
Identities = 30/70 (42%), Positives = 50/70 (71%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYH 445
+L A+ ++LAF+IP ++ ++ ++ P +G G II+SPTREL+ QTFGVL ++ K+H
Sbjct: 111 ILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFH 170
Query: 446 HHTYGLVMGG 475
+ GL++GG
Sbjct: 171 KFSAGLLIGG 180
Score = 50.4 bits (115), Expect = 7e-07
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +1
Query: 139 QKFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+KF+ L + + T G+KD + MT++Q+ AIP L GRD++GA +TGSGK
Sbjct: 71 RKFAQLP--ISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGK 121
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 47.6 bits (108), Expect = 5e-06
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 178 TLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
TL GI+D GF TMT +Q +P +L+G+D++ +TG+GK
Sbjct: 91 TLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGK 130
Score = 40.3 bits (90), Expect = 7e-04
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTG------VIILSPTRELSMQTFGVLM 427
+L +AK +++AFL+P+++ + +K P + V+++ PTREL+ Q
Sbjct: 120 ILAKAKTGTGKTVAFLLPSIEAV--IKAPPASRDNRHPPIIVLVVCPTRELACQAAAEAN 177
Query: 428 ELMKYHHHT-YGLVMGGANRSTEAQKL 505
L+KYH +V+GG TE ++L
Sbjct: 178 ILLKYHPSIGVQVVIGGTKLPTEQRRL 204
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 45.2 bits (102), Expect = 3e-05
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLI--YNLKFKPGNGTGVIILSPTRELSMQTFGVLMELM- 436
+LV A +++A+L P + + ++ K +GT +++ PTREL +Q + L +L+
Sbjct: 70 VLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH 129
Query: 437 KYHHHTYGLVMGGANRSTEAQKL 505
++H G VMGG ++ E +L
Sbjct: 130 RFHWIVPGYVMGGEKKAKEKARL 152
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 199 MGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
MGF T +QA+AIP +L GRD++ TG+GK
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGK 80
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 44.8 bits (101), Expect = 3e-05
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
L I +GFT T IQA+ P L+GRDL+G +TGSGK
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGK 215
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAM-DLIYNLKFKPGNGTGVIILSPTRELSMQ 409
A+ ++LA+L+PA+ + + +G V+IL+PTREL++Q
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQ 253
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 44.8 bits (101), Expect = 3e-05
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
L I +GFT T IQA+ P L+GRDL+G +TGSGK
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGK 215
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAM-DLIYNLKFKPGNGTGVIILSPTRELSMQ 409
A+ ++LA+L+PA+ + + +G V+IL+PTREL++Q
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQ 253
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 44.8 bits (101), Expect = 3e-05
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 178 TLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+L IKD GF TMT +Q +P +L+G+D++ +TG+GK
Sbjct: 393 SLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGK 432
Score = 41.1 bits (92), Expect = 4e-04
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTG------VIILSPTRELSMQTFGVLM 427
+L +AK +++AFL+PA++ + +K P + V+++ PTREL+ Q
Sbjct: 422 VLAKAKTGTGKTVAFLLPAIEAV--IKSPPASRDSRQPPIIVLVVCPTRELASQAAAEAN 479
Query: 428 ELMKYHHHT-YGLVMGGANRSTEAQKL 505
L+KYH +V+GG TE +++
Sbjct: 480 TLLKYHPSIGVQVVIGGTKLPTEQRRM 506
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 44.0 bits (99), Expect = 6e-05
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +1
Query: 172 EPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+ L G+ D G+ +EIQ +A+ P+L+GRD++ Q+G+GK
Sbjct: 31 DKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGK 72
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 178 TLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+L IKD G+ TMT +Q +P +L+G+D++ +TG+GK
Sbjct: 65 SLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGK 104
Score = 36.3 bits (80), Expect = 0.012
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLK-FKPGNGTGVI---ILSPTRELSMQTFGVLMEL 433
+L +AK +++AFL+P+++++ P N I ++ PTREL+ Q L
Sbjct: 94 VLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTL 153
Query: 434 MKYHHHT-YGLVMGGANRSTEAQKL 505
+KYH +V+GG E +++
Sbjct: 154 LKYHPSIGVQVVIGGTRLGLEQKRM 178
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 154 LEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
++ K P L +KD G T IQ + +P +L GRD++G TGSGK
Sbjct: 100 MDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 147
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 296 RSLAFLIPAMDLIYN----LKFKPGNGTGVIILSPTRELSMQTFGVLMELM 436
++L F++P + L + G G +++ P+REL+ QT+ V+ + +
Sbjct: 147 KTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFV 197
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +1
Query: 172 EPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
E L G+ + GF + IQ +A+ P+L+GRD++ Q+G+GK
Sbjct: 44 EDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGK 85
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 42.7 bits (96), Expect = 1e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+K GFT T IQ++ P ++GRDL+G +TGSGK
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGK 149
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKP----GNGTGVIILSPTRELSMQ 409
A+ ++L++L+PA I ++ +P G+G V++L+PTREL++Q
Sbjct: 143 AETGSGKTLSYLLPA---IVHVNAQPMLAHGDGPIVLVLAPTRELAVQ 187
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 166 VCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
V E + + +G+ ++IQA+A+P LEG+D++G QTGSGK
Sbjct: 16 VREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGK 59
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYH 445
++ A+ ++ AFLIP ++ + + P G +ILSPTR+L+ QT EL K+
Sbjct: 68 VVAMARTGSGKTAAFLIPMLEKLK--QHVPQGGVRALILSPTRDLAEQTLKFTKELGKFT 125
Query: 446 HHTYGLVMGGANRSTEAQKLS 508
L++GG + + ++L+
Sbjct: 126 DLRVSLLVGGDSMEDQFEELT 146
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
IK G+ T IQ K +P +L G D+V +TGSGK
Sbjct: 43 IKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGK 78
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 163 KVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
K P L +K+ G T IQ + +P +L GRD++G TGSGK
Sbjct: 152 KFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGK 196
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGT-GVIILSPTRELSMQTFGVLMELMKY 442
+L RAK ++ AF IP ++ K P N +IL PTREL++QT V EL KY
Sbjct: 164 ILARAKNGTGKTGAFCIPVLE-----KIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 443 HHHTYGLVMGGANRSTEAQKL 505
+ + GG + + +L
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRL 239
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
L GI + GF + IQ ++IP L G D++ + G+GK
Sbjct: 136 LKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGT-GVIILSPTRELSMQTFGVLMELMKY 442
+L RAK ++ AF IP ++ K P N +IL PTREL++QT V EL KY
Sbjct: 164 ILARAKNGTGKTGAFCIPVLE-----KIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 443 HHHTYGLVMGGANRSTEAQKL 505
+ + GG + + +L
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRL 239
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
L GI + GF + IQ ++IP L G D++ + G+GK
Sbjct: 136 LKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 41.1 bits (92), Expect = 4e-04
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 157 EDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG--LPYTCYGS 330
E K+ L ++ G+ + IQ AIP L+ RD++G +TGSGK LP Y S
Sbjct: 317 ESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYIS 376
Query: 331 NL*P 342
L P
Sbjct: 377 RLPP 380
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 40.7 bits (91), Expect = 6e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +1
Query: 166 VCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
V E L ++++GF T+IQ +A+P L GRD + QTGSGK
Sbjct: 83 VPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGK 126
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 184 MGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+ I+ + T +Q AIP LLEGRDL+ QTGSGK
Sbjct: 172 LNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGK 209
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 40.7 bits (91), Expect = 6e-04
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 193 KDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
K++G T +Q +P +L GRD++G QTGSGK
Sbjct: 74 KELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGK 108
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 40.3 bits (90), Expect = 7e-04
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHTY 457
AK ++L +LIPA L+ + + NG V+IL+PTREL+ Q + + +
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 458 GLVMGGANRSTEAQKL 505
+ GGA + + ++L
Sbjct: 539 TCLYGGAPKGPQLKEL 554
Score = 35.9 bits (79), Expect = 0.016
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 202 GFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG 306
GF + T IQA+ P L+ RD+V +TGSGK G
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLG 488
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 40.3 bits (90), Expect = 7e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+ IK + T IQ +A+P +L GRD++G +TGSGK
Sbjct: 240 MSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGK 278
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNL-KFKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHT 454
AK ++ AF++P + I + + + G +I +PTREL+ Q F + K +
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLR 331
Query: 455 YGLVMGGANRSTEAQKL 505
V GG ++ + ++L
Sbjct: 332 VSAVYGGMSKHEQFKEL 348
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 40.3 bits (90), Expect = 7e-04
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGT-GVIILSPTRELSMQTFGVLMELMKY 442
+L RAK ++ AF IP ++ K P N +IL PTREL++QT V EL KY
Sbjct: 194 ILARAKNGTGKTGAFCIPTLE-----KIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248
Query: 443 HHHTYGLVMGGANRSTEAQKL 505
+ GG + + +L
Sbjct: 249 LKIEVMVTTGGTSLRDDIMRL 269
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
L GI + GF + IQ ++IP L G D++ + G+GK
Sbjct: 166 LRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = +1
Query: 154 LEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+E + P L + +G+ T IQA IP L GRDL + TGSGK
Sbjct: 170 MELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGK 217
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +2
Query: 296 RSLAFLIPAMDLIYNLKFKPGN--GTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVM 469
++ AF +P ++ L F+P T V+IL+PTREL++Q ++ L ++ GL++
Sbjct: 217 KTAAFALPTLE---RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIV 273
Query: 470 GG 475
GG
Sbjct: 274 GG 275
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 184 MGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG 306
+ ++D GF + QA IP +L G+D++ A +TGSGK G
Sbjct: 93 IALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHG 133
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 139 QKFSSLEDKV-CEPTLM-GIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+ F+ L + CE ++ + ++GF T IQ +AIP LL GR+ TGSGK
Sbjct: 137 KSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGK 191
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 296 RSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQT 412
++ AF+ P ++ LK +G +ILSP REL+ QT
Sbjct: 191 KTFAFICP---MLIKLKRPSTDGIRAVILSPARELAAQT 226
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG 306
+K + + IQA+A+P ++ GRD +G +TGSGK G
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLK-FKPGNGTGVIILSPTRELSMQTFGVLMELMK 439
AK ++L F++P + I + + G+G ++++PTREL Q + + + K
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSK 494
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG 306
L + GF+ T IQA++ P ++GRD+V +TGSGK G
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLG 211
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHTY 457
AK ++L +LIP + ++ G +++LSPTREL+ Q ++ + +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 458 GLVMGGANRSTEAQKL 505
+ GGA + + + L
Sbjct: 262 TCLYGGAPKGPQLRDL 277
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG 306
L + GF+ T IQA++ P ++GRD+V +TGSGK G
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLG 211
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHTY 457
AK ++L +LIP + ++ G +++LSPTREL+ Q ++ + +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 458 GLVMGGANRSTEAQKL 505
+ GGA + + + L
Sbjct: 262 TCLYGGAPKGPQLRDL 277
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG 306
L + GF+ T IQA++ P ++GRD+V +TGSGK G
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLG 211
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHTY 457
AK ++L +LIP + ++ G +++LSPTREL+ Q ++ + +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 458 GLVMGGANRSTEAQKL 505
+ GGA + + + L
Sbjct: 262 TCLYGGAPKGPQLRDL 277
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 38.7 bits (86), Expect = 0.002
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +2
Query: 269 LVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTG------VIILSPTRELSMQTFGVLME 430
LV+AK +S+AFL+PA++ + G G +IL PTREL+ Q
Sbjct: 369 LVKAKTGTGKSMAFLLPAIETVLK-AMNSGKGVNKVAPIFALILCPTRELASQIAAEGKA 427
Query: 431 LMKYHHHT-YGLVMGGANRSTEAQKL 505
L+K+H ++GG + Q+L
Sbjct: 428 LLKFHDGIGVQTLIGGTRFKLDQQRL 453
Score = 30.7 bits (66), Expect = 0.59
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 127 ILSDQKFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
I S ++F E + TL + G MT +Q + L+G+D + +TG+GK
Sbjct: 324 IYSAKRFD--ESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGK 378
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
LMGI + GF + IQ ++IP L GRD++ + G+GK
Sbjct: 143 LMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
Score = 37.9 bits (84), Expect = 0.004
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYH 445
+L RAK ++ AF IP ++ I + N +I+ PTREL++QT V EL K+
Sbjct: 171 ILARAKNGTGKTAAFCIPVLEKID----QDNNVIQAVIIVPTRELALQTSQVCKELGKHL 226
Query: 446 HHTYGLVMGGANRSTEAQKL 505
+ GG + + +L
Sbjct: 227 KIQVMVTTGGTSLKDDIMRL 246
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
LMGI + GF + IQ ++IP L GRD++ + G+GK
Sbjct: 143 LMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
Score = 37.9 bits (84), Expect = 0.004
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYH 445
+L RAK ++ AF IP ++ I + N +I+ PTREL++QT V EL K+
Sbjct: 171 ILARAKNGTGKTAAFCIPVLEKID----QDNNVIQAVIIVPTRELALQTSQVCKELGKHL 226
Query: 446 HHTYGLVMGGANRSTEAQKL 505
+ GG + + +L
Sbjct: 227 KIQVMVTTGGTSLKDDIMRL 246
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 142 KFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+FS L+ + E + + GF T +QA+ IP L +D+V TGSGK
Sbjct: 15 RFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGK 66
Score = 32.3 bits (70), Expect = 0.19
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKF---KPGNGTGVIILSPTRELSMQ 409
++V A ++LAFL+P +++I KP GVII SPTRELS Q
Sbjct: 56 VVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVII-SPTRELSAQ 105
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 142 KFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+FS L+ + E + + GF T +QA+ IP L +D+V TGSGK
Sbjct: 16 RFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGK 67
Score = 32.3 bits (70), Expect = 0.19
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLKF---KPGNGTGVIILSPTRELSMQ 409
++V A ++LAFL+P +++I KP GVII SPTRELS Q
Sbjct: 57 VVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVII-SPTRELSAQ 106
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 37.5 bits (83), Expect = 0.005
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +2
Query: 269 LVRAKLAPERSLAFLIPAMDLIYNLKFKPGNGTG------VIILSPTRELSMQTFGVLME 430
LV+AK +S+AFL+PA++ + G G V+IL PTREL+ Q
Sbjct: 416 LVKAKTGTGKSMAFLLPAIETVLK-AMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKA 474
Query: 431 LMKYHHHTYGL--VMGGANRSTEAQKL 505
L+K +H G+ ++GG + Q+L
Sbjct: 475 LLK-NHDGIGVQTLIGGTRFRLDQQRL 500
Score = 31.1 bits (67), Expect = 0.45
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 127 ILSDQKFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
I S ++F E + TL + G MT +Q + L+G+D + +TG+GK
Sbjct: 371 IYSAKRFD--ESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGK 425
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG 306
+K + + IQ +A+P ++ GRD +G +TGSGK G
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 202 GFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
G T IQ AIP +LEG+D+V +TGSGK
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGK 96
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLIYNLK--FKPGNGTGVIILSPTRELSMQTFGVLMELMK 439
++ RAK ++LA+L+P + +++ K IL P+REL Q + + L++
Sbjct: 86 VVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIE 145
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 184 MGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+ I+ + T +Q AIP L GRDL+ QTGSGK
Sbjct: 159 LNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGK 196
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLI--YNLKFKPGNGTGVIILSPTRELSMQ 409
++ RA+ ++LAF IP +D I YN K G ++L+PTREL+ Q
Sbjct: 144 MIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQ 193
Score = 34.7 bits (76), Expect = 0.036
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+ G + IQ + P +EGRD++G +TG+GK
Sbjct: 119 LSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGK 154
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+K G + IQ + P +EGRD++G +TG+GK
Sbjct: 131 LKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGK 166
Score = 35.5 bits (78), Expect = 0.021
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLI--YNLKFKPGNGTGVIILSPTRELSMQ 409
++ RA+ ++LAF IP +D I +N K G ++L+PTREL+ Q
Sbjct: 156 MIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQ 205
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 36.3 bits (80), Expect = 0.012
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 181 LMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
L+ ++ G+ T IQ +AIP L G+ L+ + TGSGK
Sbjct: 122 LLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGK 160
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 35.9 bits (79), Expect = 0.016
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 202 GFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
GF+ T++Q+ A+P +++G D V TGSGK
Sbjct: 129 GFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGK 160
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 35.5 bits (78), Expect = 0.021
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 172 EPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
E + +K+ F IQA A P+++G+ + A Q+GSGK
Sbjct: 383 EDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGK 424
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.1 bits (77), Expect = 0.027
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 184 MGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+ I+ + T +Q AIP LL RDL+ QTGSGK
Sbjct: 164 LNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.1 bits (77), Expect = 0.027
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 184 MGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
+ I+ + T +Q AIP LL RDL+ QTGSGK
Sbjct: 164 LNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 35.1 bits (77), Expect = 0.027
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 205 FTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
F + IQ+ P LL+GRDL+G +TGSGK
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGK 164
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVI-----ILSPTRELSMQTFGVLME 430
AK ++LAF IPA+ + K G G+ + +LSPTREL++Q VL E
Sbjct: 158 AKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLRE 213
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 34.3 bits (75), Expect = 0.048
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 202 GFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPG 306
GF+ + IQA++ P ++ RD+V +TGSGK G
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG 282
Score = 33.5 bits (73), Expect = 0.084
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 278 AKLAPERSLAFLIPAMDLIYNLKFKPGNGTGVIILSPTRELSMQTFGVLMELMKYHHHTY 457
AK ++L +LIP + + G +++LSPTREL+ Q ++ K +
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISC 332
Query: 458 GLVMGGANRSTEAQKL 505
+ GGA + + +++
Sbjct: 333 ACLYGGAPKGPQLKEI 348
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 34.3 bits (75), Expect = 0.048
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 130 LSDQKFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
L++ +FS LE + + + F T +QA IP L +D+ TGSGK
Sbjct: 11 LTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGK 66
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +2
Query: 272 VRAKLAPERSLAFLIPAMDLIY-NLKF--KPGNGTGVIILSPTRELSMQTFGV 421
V A ++LAF++P ++++ + F KP GVII SPTRELS Q + V
Sbjct: 58 VDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVII-SPTRELSTQIYNV 109
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 33.9 bits (74), Expect = 0.063
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 163 KVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
++ P +K G + IQA +L+G DLVG +TG GK
Sbjct: 102 RISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGK 146
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 33.5 bits (73), Expect = 0.084
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
++ G T + IQ + P L+GRD++ +TG+GK
Sbjct: 117 LEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGK 152
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +2
Query: 266 LLVRAKLAPERSLAFLIPAMDLI------YNLKFKPGNGTGVIILSPTRELSMQTFGVLM 427
++ RAK ++LAF IP + + Y + G ++L+PTREL+ Q +
Sbjct: 142 IIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK 201
Query: 428 ELMKY 442
E Y
Sbjct: 202 ESAPY 206
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 33.5 bits (73), Expect = 0.084
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 136 DQKFSSLEDKVCEPTLM-GIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
D+ S + +P L+ GI GF + IQ + I P +G D++ Q+G+GK
Sbjct: 37 DEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGK 91
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 172 EPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
E L GI GF + IQ + I P +G D++ Q+G+GK
Sbjct: 48 ENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGK 89
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 172 EPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
E L GI GF + IQ + I P +G D++ Q+G+GK
Sbjct: 48 ENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGK 89
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 31.5 bits (68), Expect = 0.34
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 172 EPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGK 297
E + ++++ TEIQ IP ++E + +V TGSGK
Sbjct: 121 EEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGK 162
Score = 31.5 bits (68), Expect = 0.34
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 296 RSLAFLIPAMDLIYNLKFKPGNGTG-----VIILSPTRELSMQTFGVLMELMKYHHHTYG 460
++LA+L+P + L+ + G T ++L PTRELS Q + V + +
Sbjct: 162 KTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSI 221
Query: 461 LVMGGANRSTEAQKLS 508
LV GG+ + L+
Sbjct: 222 LVSGGSRIRPQEDSLN 237
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 31.1 bits (67), Expect = 0.45
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 142 KFSSLEDKVCEPTLM-GIKDMGFTTMTEIQAKAIP-PLLEGRDLVGAGQTGSGK 297
+FS+ P LM I + F T+IQ +G+D++GA +TGSGK
Sbjct: 188 EFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGK 241
>At3g57570.1 68416.m06410 expressed protein
Length = 1057
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 LSDQKFSSLEDKVCEPTLMGIKDMGF-TTMTEIQAKAIPPLL 252
+ DQKFS + ++ E L GIK F + ++E K +P LL
Sbjct: 324 MEDQKFSKISKELLEQYLSGIKGKKFESILSEYGMKLVPILL 365
>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 668
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 306 ARLLSGASLARTNKISTLQQRRYSFCLYFCHCCESHIFY 190
ARL+ G++L ++ IS R S FC CESH Y
Sbjct: 592 ARLMPGSTLTYSH-ISYEVVRNNSMSRPFCRACESHCMY 629
>At1g19000.2 68414.m02364 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +1
Query: 121 LGILSDQKFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKK 300
L LSD + SS ED++ + G D T+ D V + G+K
Sbjct: 40 LNNLSDYEKSSPEDEIPKIVTAGAGDGEDKNETDATVIVADGYASANDAVQISSSSGGRK 99
Query: 301 PGLPYT 318
G+P+T
Sbjct: 100 RGVPWT 105
>At1g19000.1 68414.m02363 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +1
Query: 121 LGILSDQKFSSLEDKVCEPTLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKK 300
L LSD + SS ED++ + G D T+ D V + G+K
Sbjct: 40 LNNLSDYEKSSPEDEIPKIVTAGAGDGEDKNETDATVIVADGYASANDAVQISSSSGGRK 99
Query: 301 PGLPYT 318
G+P+T
Sbjct: 100 RGVPWT 105
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 KAIPPLLEGRDLVGAGQTGSGK 297
+AIP L G+ L+ + TGSGK
Sbjct: 2 QAIPAALTGKSLLASADTGSGK 23
>At1g58050.1 68414.m06579 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1417
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = +1
Query: 190 IKDMGFTTMTEIQAKAIPPLLEGRDLVGAGQTGSGKKPGLPYTCYGSNL*P*IQAREWYW 369
+K ++E++ + L E LV G+TGSGK +P I + +
Sbjct: 591 LKTRAALPISEVKKDILQKLKEKDVLVVCGETGSGKTTQVPQFILDDM----IDSGHGGY 646
Query: 370 CNHIVSDKRVIDANLRSANGIDEISPSY 453
CN I + R I R A+ E P +
Sbjct: 647 CNIICTQPRAITVAQRVADERCEPPPGF 674
>At1g79760.1 68414.m09306 expressed protein
Length = 299
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 243 RYSFCLYFCHCCESHIFYTHQSW 175
R+S CL FCH E H+ Y+ + W
Sbjct: 188 RHSLCLNFCH-AEFHV-YSKRGW 208
>At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 681
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 308 FLIPAMDLIYNLKFKPGNGTGVIILS 385
FL A D+I+N+ +KP T +L+
Sbjct: 534 FLAKAKDIIHNMPYKPSGATWATLLN 559
>At1g23760.1 68414.m02998 BURP domain-containing protein /
polygalacturonase, putative similar to polygalacturonase
isoenzyme 1 beta subunit [Lycopersicon esculentum]
GI:170480; contains Pfam profile PF03181: BURP domain
Length = 622
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -2
Query: 429 SISTPKVCIDNSLVGDNMITPVPFPGLNLRL*IRSIAGIRKARLL---SGASLARTNKIS 259
++S K C+ ++ + T V + LR S+AG ++ ++ +G + R K
Sbjct: 480 TVSETKRCVGSAEDMIDFATSVLGRSVVLRT-TESVAGSKEKVMIGKVNGINGGRVTKSV 538
Query: 258 TLQQRRYSFCLYFCH 214
+ Q Y + LY+CH
Sbjct: 539 SCHQSLYPYLLYYCH 553
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,101,616
Number of Sequences: 28952
Number of extensions: 211095
Number of successful extensions: 601
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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