Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B15
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    29   0.46 
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    29   0.81 
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   0.81 
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    26   5.7  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   5.7  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   5.7  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   7.5  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    25   9.9  
SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11 ...    25   9.9  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 642 HVPGNRMPCNGDTKTPKCQKNCESSYNVPFKKDKRYGKH 526
           HVPGN  P     K+P  QK+   +  +P    + +  H
Sbjct: 80  HVPGNNSPLQTPQKSPPRQKHTAPATPIPVSASRHHKPH 118


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -2

Query: 614 TVILKHQNAKRTVNLVITSHSRKTNDTVNMFILYRDMKTISKLNCLRMVLSKPLLL 447
           T+  +H N    + L I  + RKTN   N   ++ D   +S++  +RM+L + + L
Sbjct: 173 TIRTRHDNVAVEIALDIQEYRRKTNQIDNSIQIFLDRFYMSRIG-IRMLLGQYIAL 227


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 516 VSGHEDHIKAELFKNGPVEAAFTVYSDLLSYKNGVYK 406
           +  HE  +K E+ KNG VE A   + +L+ Y+  +++
Sbjct: 10  ILSHEVLLKIEMSKNGIVEYANPAFFELIGYEGDLFQ 46


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 521 ILYRDMKTISKLNCLRMVLSKPLL--LYTRTYSLIRTVF 411
           +L  +M   S  NCL  +L KP L  +YT+  S +++ +
Sbjct: 322 LLLLNMNLTSAFNCLANLLDKPFLQAVYTQDTSSLKSFY 360


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 509 DMKTISKLNCLRMVLSKPLLLY-TRTYSLIRTVFTNIQRE 393
           D+ T+ K +C+   +S P+LL  +  ++L   +F N +RE
Sbjct: 647 DLSTVVKTSCIGDTMSLPVLLTGSAPWTLEYEIFRNNKRE 686


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +1

Query: 322 YKPVFVIILYSPTYNFNSVPAESISLCMFVN-TVLIRE*VRVYSKSGFDRTILKQFSFDM 498
           Y+P    I +S TY+   V     +  +F N ++LI      Y+ SG D + L    +D+
Sbjct: 303 YRPTHETIKHSLTYSIVEVALSLFTFALFTNSSILIVAGAVFYNTSGADTSDLFSI-YDL 361

Query: 499 V--FMSRYRINMFTVSFVF 549
           +  ++S     +F V+ +F
Sbjct: 362 LKEYVSISCGRLFAVALLF 380


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 351 VENNNKYWLIANSWNS-DWGDN 289
           +E   ++WL+  SWN+   GDN
Sbjct: 510 IETKGRWWLVGASWNNVPSGDN 531


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 572 LVITSHSRKTNDTVNMFILYRDMKTISKLNCLRMVLSKPLLLYTRTYSLIRT 417
           L +  H  K+   +N F L  D+K + + N    VL   L LY R    I T
Sbjct: 89  LRMIEHYEKSLSNINFFSLSNDLKRLEEYNTSCSVL---LSLYQRQLKKIST 137


>SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 275 ILKKPLSPQSEFHEFAISQYLLLFSTPQPIILIACPPRAFPSV 403
           +L + +S Q    EFA   Y    + P+P+++   PP+A PSV
Sbjct: 6   LLNEKISVQQARQEFA--NYAN--NIPEPMMVSVAPPKANPSV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,287
Number of Sequences: 5004
Number of extensions: 55675
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)