Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B14
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    27   1.3  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   5.1  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   6.8  

>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 152 RTFIIASESRRLPLQRYLVQLEPATSLLEVFVIRPKLFHLAMNTG 18
           +T+I +  S ++P   YL+      S+LE   +  ++F   +N G
Sbjct: 82  KTYIFSLVSMKVPFTVYLIISSQCKSILEDDAVEKEIFSFTINPG 126


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 483 FYTLYQWFHILSLLDPLCGFCNKCM 409
           F + +QWFH+  ++   C F   C+
Sbjct: 286 FGSSHQWFHVCVIIAAFCHFHGVCI 310


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 357 VYHGEGLVEDVNCNEPYPYICYRNHTKD 440
           V+  + +V  ++ ++ YPY+ +  H KD
Sbjct: 424 VFMIQEVVSQISASDGYPYVAWVEHCKD 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,210
Number of Sequences: 5004
Number of extensions: 45710
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)