Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B14
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1367 - 36711738-36711774,36711962-36712686,36713217-367132...    32   0.32 
06_03_0592 + 22585546-22588573,22588680-22589032                       30   0.97 
08_01_0815 - 7914634-7914740,7915262-7915357,7922268-7922328,792...    29   3.0  
02_01_0069 + 491452-492594                                             29   3.0  
12_02_0208 + 15549411-15549740                                         27   6.8  
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630...    27   6.8  
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513...    27   6.8  
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36...    27   9.0  

>01_06_1367 -
           36711738-36711774,36711962-36712686,36713217-36713284,
           36714043-36714157
          Length = 314

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 366 GEGLVEDVNCNEPYPYICYRNHT---KDLVMTECGTTDKEYKMD 488
           G+G +E  NC+ P  + C ++HT   +D +  E G    E++ D
Sbjct: 163 GQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFD 206


>06_03_0592 + 22585546-22588573,22588680-22589032
          Length = 1126

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 184 FNLKFVGDANIAPS*SHRSLAVCHFSGISCSLNQPP 77
           F  +  G + +  S S+ SL  C++ G++CS   PP
Sbjct: 40  FKSQLSGPSRVLSSWSNTSLNFCNWDGVTCSSRSPP 75


>08_01_0815 -
           7914634-7914740,7915262-7915357,7922268-7922328,
           7922365-7923621
          Length = 506

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = -3

Query: 512 LVTLVSPLVHFILFISGSTFCHY*ILCVVSVTNVWIWLIAVDVLY*AFAVIYDAVFIVIV 333
           L+TL    V  ++FI+ ST CHY I+   S  ++ + LI    +  +  ++   + I++ 
Sbjct: 34  LITLFQLEVLLLMFIAMSTLCHYVIVDAYSTLSM-LMLITFTTITGSNPIVNIMIIILLF 92

Query: 332 IIRV 321
            I++
Sbjct: 93  WIKI 96


>02_01_0069 + 491452-492594
          Length = 380

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 60  EYFEEAGGWFKLHEIPLK 113
           EY EE GGWF L   P+K
Sbjct: 239 EYVEEHGGWFGLSSTPVK 256


>12_02_0208 + 15549411-15549740
          Length = 109

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -3

Query: 512 LVTLVSPLVHFILFISGSTFCHY*ILCVVSVTNVWIWLIAVDVLY*AFAVIYDAVFIVIV 333
           L+TL    V  ++FI+ ST CHY I+   S  ++ + LI    +  +  ++     I++ 
Sbjct: 34  LITLFQLEVLLLMFIAMSTLCHYVIVDAYSTLSM-LMLITFTTITGSNPIVNIMTIILLF 92

Query: 332 IIRV 321
            I++
Sbjct: 93  WIKI 96


>09_06_0056 -
           20561645-20561920,20562024-20562611,20562698-20563055,
           20563149-20563483,20563593-20563633,20563722-20563932,
           20564289-20564348,20564432-20564457,20565066-20565264
          Length = 697

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 86  PATSLLEVFVIRPKLFHLAMNTGH*H 9
           P   L+ +FV+ P +F +A N GH H
Sbjct: 36  PLVVLVFLFVLAPSIFFVARNGGHVH 61


>03_06_0125 +
           31850858-31850905,31851032-31851109,31851221-31851337,
           31851346-31851642,31852498-31852509,31852737-31852822,
           31853516-31853660,31853767-31853862,31854333-31854424,
           31854696-31854797,31854891-31855037,31855116-31855266,
           31855418-31855480,31855570-31855806,31856081-31856185,
           31856263-31856376,31856459-31857037,31857279-31857286,
           31857858-31858004,31858077-31858203
          Length = 916

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
 Frame = +3

Query: 300 PIKWMPGXXXXXXXXXXCIVYHGEGLVEDVNCNEPYPYICYRNHTKD-LVMTECGTTDKE 476
           P    P           C V HG   +  +      P +C + H     +M+EC   D +
Sbjct: 709 PFMSFPSPQSQPYSPSACFVQHGFSTMSYLRNQHETPTVCRQEHLSSYYMMSECSPFDGD 768

Query: 477 YKMDQRTN 500
            K  Q+TN
Sbjct: 769 GK--QKTN 774


>09_01_0014 +
           357398-357583,360213-360323,360520-360676,361067-361233,
           362012-362122,362206-362349,362436-362476,364134-364174,
           364175-364261,365402-365724
          Length = 455

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 14  SGRYSLPSGTV*V*LRILRGGWWLVQAARDTAEVANGE 127
           SG   + SG   + LRI RG WW  Q  R  A    G+
Sbjct: 163 SGDGDIGSGKCSILLRI-RGKWWQAQGVRQEAGAVKGK 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,668,543
Number of Sequences: 37544
Number of extensions: 300072
Number of successful extensions: 663
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)