Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B13
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   3.9  
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    28   5.2  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   6.8  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    28   6.8  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    27   9.0  

>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 426 NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 557
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>01_03_0256 +
           14288885-14288936,14289362-14291335,14291648-14291673,
           14291855-14292025,14292560-14292647,14292711-14292802,
           14292920-14293384,14293860-14294633,14294890-14295087,
           14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
 Frame = +2

Query: 65  EDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIP 244
           + I F+SY +     +P WW +E   N      EIY        +  Y++RL    G+  
Sbjct: 281 QSIPFSSYIWR-RGTIPIWWGAE-IKNAVSVEAEIYVADDPFNGSLQYYQRLGRRYGNKS 338

Query: 245 -EFSWYSPIKTGYYPLMTSYYFPFAQ-RPDNYNLHSVK-NYEAIRFLDIFEKTFVQ 403
            E +  S  K G  P++      +   +P+   + S K + E +R      KT++Q
Sbjct: 339 LEVNATSQKKPGVVPIVCVNLLRYGDGKPETVLVDSFKSSLEYLRSTKKLGKTWIQ 394


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 371 TVLLRSSLRCVDCSCPAFERMG 306
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 41  EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 154
           E+ + +    IG   Y  Y   + PF       GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 329 NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 415
           NYN+  V   KN+ A+R  DIF KT  +  +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,647
Number of Sequences: 37544
Number of extensions: 312754
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)