Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B12
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   3.9  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   6.8  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   9.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.0  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 387  LYNGSEEANYASTAIVI-LYRK*RARSTISRIAIQGV 494
            LY G EEAN+ +  + I L+R+ RA   +  +   GV
Sbjct: 1448 LYEGDEEANFFNNILHIQLHRRKRAMKRLVNVCAIGV 1484


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
          Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 12 VDYSEATNPYISLSKTFSGDESGFL 86
          ++Y ++  P I   + FSG+ESG L
Sbjct: 25 IEYQDSQEPCICTIQLFSGNESGSL 49


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 455 SSEHD*SNCHTRSLISVWWSSFLTNSKVYR 544
           +S  D  +C  R L S+WWS     ++ YR
Sbjct: 52  NSLQDKWDCWKRDLWSIWWSLSRKATRFYR 81


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 627 FQIYVSTSRFQPXHIFNESFLCC 559
           F++    S F+P  ++ E+F CC
Sbjct: 547 FEVGKGFSYFRPEQVYLETFFCC 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,310
Number of Sequences: 5004
Number of extensions: 54570
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)