Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B10
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   1.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   2.3  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    26   3.1  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   3.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   5.4  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.1  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   7.1  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   9.4  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    24   9.4  

>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 107 WKYNKEISICFFANST 60
           WKYN ++  C+  NST
Sbjct: 116 WKYNPDLDYCYLDNST 131


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 43  VRTDDSVEFAKKQIDISLLYF 105
           ++ D +V+ +KKQI  SLLYF
Sbjct: 262 IKKDSNVKCSKKQILFSLLYF 282


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 63  RVREKADRYFLIILPCSRTKSRFEIYNYF 149
           ++R+ A +   II+P S +K++ E+ +YF
Sbjct: 110 KLRDSASQIMDIIIPDSLSKAKVELLDYF 138


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +1

Query: 37  DPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHY*NETAVKI 210
           D +R +D  +      ++ L Y +A+    V   + + A W    NIN   NE  + +
Sbjct: 178 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNL 235


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +1

Query: 235 WLLALSVPFSPLNPTHQFEAVIMFNVLYSAKDYDTFYKTTVYMKDRV 375
           W   L   F PL  + +       +  +S + ++ FY    Y K+R+
Sbjct: 299 WTEVLQDTFLPLFDSEKLRFATATSTRFSPQGFEKFYSNYDYYKERI 345


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 304 FNVLYSAKDYDTFYKTTVYMKDRVNQDLYLYVLSTLHIHRS 426
           F +++S  DY  FY  TV  KD     L  ++     +H++
Sbjct: 654 FRIIFSNGDYIDFYAETVGEKDEWMSTLRQHLGQCSMVHKN 694


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +3

Query: 78  ADRYFLIILPCSRTKSRFEIYNYFR 152
           A++Y + + PC+ T  +FE++  ++
Sbjct: 94  AEKYSVTMEPCTYTDEKFEVFKKYQ 118


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 34  CDPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNIN 180
           C P+  DDS+    K+ D  LL F   E  HVS +  ++A W  E NI+
Sbjct: 178 CAPIDLDDSII---KRDD--LLSFCNVEV-HVSPNAILNACWLSERNIH 220


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 7   LALIFAPGLCDPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSIT 144
           +ALI APGL        SV   +++ID+ +   +A   NH + S T
Sbjct: 266 IALIDAPGLNTDSMKTTSVFACQEEIDVVVFVVNAE--NHFTLSAT 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,463
Number of Sequences: 5004
Number of extensions: 36086
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)