Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_B10
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395... 32 0.19
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531... 31 0.32
07_03_1390 + 26217623-26218370,26218435-26218934 31 0.43
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 31 0.43
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977... 28 4.0
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 27 5.3
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 27 7.0
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 27 9.2
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 27 9.2
>05_05_0353 -
24338717-24338946,24339046-24339134,24339421-24339500,
24339768-24339902,24340231-24340461,24340540-24340634,
24340734-24340819,24341467-24341570,24341674-24341805,
24341883-24341999,24342170-24342229,24342779-24342820,
24342878-24342952,24343127-24343177,24343256-24343436,
24343548-24343594,24343710-24343775
Length = 606
Score = 32.3 bits (70), Expect = 0.19
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 100 YFHAREPNHVSKSITISASWSIENNINHY*NETAVKIWILMKKQNWLLALSVPFSPLNPT 279
Y + EP ++KS T A + +N+N N + + ++ ++ + LL + PF L+P
Sbjct: 230 YAESTEPPMLAKSATRIAILGV-SNLNSS-NTRCINVSLMQQRGDSLLIMGSPFGILSPV 287
Query: 280 HQFEAV 297
H F ++
Sbjct: 288 HFFNSI 293
>06_03_0568 +
22351552-22351679,22352176-22352227,22353044-22353117,
22353233-22353322,22353833-22353976,22354885-22354973,
22355539-22355612,22357233-22357317,22357677-22357952,
22358392-22358420
Length = 346
Score = 31.5 bits (68), Expect = 0.32
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 157 WSIENNINHY*NETAVKIWILMKKQNWL 240
W + I+ Y N TA+ W++ K+ NW+
Sbjct: 44 WLVATLIDFYVNVTAISTWVIYKEVNWI 71
>07_03_1390 + 26217623-26218370,26218435-26218934
Length = 415
Score = 31.1 bits (67), Expect = 0.43
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 34 CDPVRTDDSVEFAKKQIDISLLYFHA--REPNHVSKSITISASWSIEN 171
C PV D + K+Q+ + LL + ++P+ SKS++ +A W +EN
Sbjct: 303 CMPVHAD--IIILKEQMRMQLLEYKLLRKKPSQDSKSVSTNADWKLEN 348
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 328 DYDTFYKTTVYMKDRVNQDLYLYVLSTLHIHRSDLEG 438
+YD F +TT + V D Y VL + I+R+D EG
Sbjct: 16 EYDKFIRTTDRKHEAVVNDFYSRVLDSGDIYRADYEG 52
>10_08_0422 -
17796916-17797167,17797328-17797453,17797546-17797700,
17797793-17797907,17798022-17798118,17798274-17798368,
17798500-17798585,17798689-17798819,17798909-17799090
Length = 412
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 110 AWKYNKEISICFFANSTESSVLTGSHNPGAKM 15
+W N++ + F N T++ VL HNP K+
Sbjct: 142 SWTLNEDKFLKSFTNRTKAVVLNSPHNPTGKV 173
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 172 NINHY*NETAVKIWILMKKQNWLLALSVP-FSPLNPTHQFEAVIMFNVLYSAKDY 333
N H + K +++K +L + + FSP NP H+ + + F + K Y
Sbjct: 298 NCEHCRQKVVAKKRFMIEKAPSVLTIHLKRFSPFNPRHKIDKKVQFQPTLNLKPY 352
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 357 IHERPC*PGPLPICPQHSTH 416
+H P P P+P CP ++TH
Sbjct: 80 LHHHPPPPPPVPPCPPNATH 99
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 121 NHVSKSITISASWSIENNINHY 186
NHVS+ I S W + NN + Y
Sbjct: 770 NHVSEQIQTSLPWDVHNNQHGY 791
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 28 GLCDPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIE 168
G+C R DD++EF K L + EPN VS +I + + E
Sbjct: 237 GICQEGRVDDAIEFLKN------LPSYGCEPNTVSYNIVLKGLCTAE 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,727,950
Number of Sequences: 37544
Number of extensions: 194097
Number of successful extensions: 388
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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