Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B09
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    26   2.2  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   3.9  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   6.8  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    24   6.8  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    24   6.8  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 94  TPHCLPRLNHLTRLADAETLRKAMKGFGTD*QA 192
           +P   P  + +   +  +TLR+A  G GTD QA
Sbjct: 87  SPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQA 119


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 260 NYGKDLISELKSELGGNLENVIIALMTPLSHFY 358
           NY  + + +L S+LG NLE+ II   +P S+ +
Sbjct: 250 NYEGNFVKDL-SQLGRNLEDSIIIDNSPSSYIF 281


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 KTNYGKDLISELKSELGGNLENVIIALMTP 343
           K NYG+D  S L   +G   + +I+  +TP
Sbjct: 51  KGNYGRDRNSPLSRHIGVPNQEIILQGLTP 80


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 YGKDLISELKSELGGNLENVIIALMTPLSH 352
           +GK  ++E   +L GN  NV  +L T  S+
Sbjct: 634 FGKSALTERLQKLAGNSSNVSSSLQTSSSN 663


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 82  PYKCTPHCLPRLNHLTRLAD 141
           P+ C PH  P + HL RL D
Sbjct: 775 PWNC-PHGRPTMRHLLRLKD 793


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 112 RLNHLTRLADAETLRKAMKGFGTD*QAIIDVLCRRGIVQRLEICRDF*D 258
           RL H T   D +     +K F  + + ++     +GI+Q L   RD+ D
Sbjct: 30  RLEHATLFEDRKAAALGIKSFAREFKELVAAHGLKGIIQSLH--RDYDD 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,880
Number of Sequences: 5004
Number of extensions: 28256
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)