Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_B09
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 40 5e-04
01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023... 38 0.003
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 36 0.008
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 33 0.055
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 29 1.6
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 27 4.8
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 27 6.3
01_06_1562 - 38268514-38268902,38269310-38269451,38269517-382698... 27 6.3
01_05_0426 + 22042215-22042595,22044846-22045688 27 6.3
08_02_0404 - 16788315-16788725,16788833-16789528 26 8.4
07_03_0472 - 18519169-18519285,18519561-18519671,18520689-185208... 26 8.4
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +1
Query: 139 DAETLRKAMKGFGTD*QAIIDVLCRRGIVQRLEI 240
DAE++RKA++G+GTD A+I++L R QR EI
Sbjct: 62 DAESIRKAVQGWGTDENALIEILGHRTAAQRAEI 95
>01_05_0009 -
17101633-17101836,17101948-17102040,17102122-17102334,
17102514-17102651,17102764-17102909,17106264-17106339
Length = 289
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1
Query: 139 DAETLRKAMKGFGTD*QAIIDVLCRRGIVQRLEI 240
DA+ L KA +G+GTD QA+I VL R QR +I
Sbjct: 16 DADALLKAFQGWGTDEQAVIGVLAHRDATQRKQI 49
Score = 30.7 bits (66), Expect = 0.39
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 248 TFKTNYGKDLISELKSELGGNLENVI 325
T++ NY ++LI L+SEL G+LE +
Sbjct: 52 TYEENYNENLIQRLQSELSGDLERAM 77
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 36.3 bits (80), Expect = 0.008
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 139 DAETLRKAMKGFGTD*QAIIDVLCRRGIVQRLEICRDF 252
D E LRKA KG+GT+ + II +L R QR I R +
Sbjct: 16 DCEQLRKAFKGWGTNEKLIISILAHRDAAQRRAIRRAY 53
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 33.5 bits (73), Expect = 0.055
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 139 DAETLRKAMKGFGTD*QAIIDVLCRRGIVQRLEICRDF*D 258
D + LRKA +G+GT+ II +L R QR I R + D
Sbjct: 16 DCDQLRKAFQGWGTNEALIISILAHRDAAQRRAIRRAYAD 55
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 142 AETLRKAMKGFGTD*QAIIDVLCRR 216
A+ LRK+MKG GTD +I V+ R
Sbjct: 235 AKVLRKSMKGMGTDDSTLIRVVVTR 259
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 22 VLGCVTG*YKTYIMSGQQYYPYKCTPHCLPRLNHLTRLAD 141
++GC T Y T Y C+ C P+ N+LT L D
Sbjct: 25 IVGCYTVAYITVGDREDMRYASACSAFCGPKGNNLTSLMD 64
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 55 YIMSGQQYYPYKCTPHCLPRLNHLTRLADAETLRKAMKGFG 177
Y+ +G+ +P K CL +RLA A T+R A+ +G
Sbjct: 242 YVKAGK--HPEKVELTCLANARSTSRLAPAGTVRAAVAAYG 280
>01_06_1562 -
38268514-38268902,38269310-38269451,38269517-38269865,
38270848-38271107
Length = 379
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 181 RCRNLSWPYGEFQRPPAGSNGSAGVNSEGCTCTGSTAVHS*C 56
R + SW + AG++G A +N CT AV + C
Sbjct: 291 RSKGRSWDAAARKNAGAGADGLASLNISQCTALTPPAVQAVC 332
>01_05_0426 + 22042215-22042595,22044846-22045688
Length = 407
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 51 NIHHEWTAVLPVQVHPSLFTPAEPFDPAGG 140
++HH++ P+Q HP+L +P P P GG
Sbjct: 208 DVHHDF---FPLQDHPALNSPCNP-HPLGG 233
>08_02_0404 - 16788315-16788725,16788833-16789528
Length = 368
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 228 LDDSSAAKYVNDCLLVG 178
LDD S +Y+NDC++ G
Sbjct: 79 LDDDSMCQYMNDCIVDG 95
>07_03_0472 -
18519169-18519285,18519561-18519671,18520689-18520816,
18520965-18521147,18521337-18521427
Length = 209
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -1
Query: 190 PVSRCRNLSWPYGEFQRPPAGSNGSAGVNSEGCT 89
P S C+ PY + GSN SAG CT
Sbjct: 79 PASPCKVAHLPYKDLMGSRGGSNVSAGGFESPCT 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,327,818
Number of Sequences: 37544
Number of extensions: 200706
Number of successful extensions: 420
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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