Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B04
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.3  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   3.9  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   5.2  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   5.2  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   9.0  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   9.0  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 351 CYSAIKFSCSLSRWSSNTLTRNIERLS**HLQQRCPACQGHQT 223
           CY     SC + +W  N++ +  E         RCP CQ +QT
Sbjct: 216 CYHVFHLSC-IRKWCKNSIEQRNEDA------WRCPYCQSNQT 251


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 311 GLLIPSPEILSDFPSDTFNKG 249
           G L+ SP IL +  S TFNKG
Sbjct: 785 GHLVDSPNILREVLSMTFNKG 805


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 356 YTVIPPLNFRAVYHVGLLIPSPEILSD--FPSDTFNKGVQ 243
           +TV  P++     HV +  PS   LSD  FP  +F+   Q
Sbjct: 115 FTVSVPVDVDVASHVNISSPSAPSLSDNLFPGSSFSASSQ 154


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 332 FRAVYHVGLLIPSPEILSDFPSDTFN 255
           ++AVY  G+L+PSP  LS +   + N
Sbjct: 214 WQAVYTAGVLLPSPVSLSRYMHRSLN 239


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 437 IISVCCVDLFNGYLARS 387
           I+S CCV  F  YL RS
Sbjct: 32  ILSYCCVSYFINYLDRS 48


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 228 DDLGKLDTFVEGVTRKVAQYF 290
           DD G+ ++F+   TRK+ Q+F
Sbjct: 16  DDEGQENSFLRKTTRKIQQFF 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,082
Number of Sequences: 5004
Number of extensions: 56012
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)