Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_B04
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 40 0.001
11_06_0380 + 22937941-22937984,22939375-22941481 36 0.015
04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047 29 1.7
09_03_0056 - 11936264-11939677 29 3.0
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785... 28 4.0
07_03_0956 - 22869166-22871145,22871800-22871959,22872311-228723... 28 5.2
05_03_0483 + 14585581-14587977 27 6.9
07_03_1495 + 26983415-26984797 27 9.1
06_01_1115 - 9186521-9187000 27 9.1
05_03_0100 + 8391700-8392390,8392531-8392812,8393767-8394317 27 9.1
03_01_0072 + 590008-590077,590284-590315,591874-592506 27 9.1
01_06_1698 - 39264075-39264468,39264545-39264696,39264780-392648... 27 9.1
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +3
Query: 60 SEYWVISAPVRP------ELCSRLGEPLNNGHKSGQPPVSNY*FPNTCI*RWGNWDQLVG 221
+ YW++S PV+ L +RL + ++ S P+ + P+ R G D L+
Sbjct: 3 TRYWIVSLPVQTPGSTANSLWARLQDSISR--HSFDTPLYRFNVPDL---RVGTLDSLLA 57
Query: 222 LSDDLGKLDTFVEGVTRKV 278
LSDDL K + F+EGV+ K+
Sbjct: 58 LSDDLVKSNVFIEGVSHKI 76
>11_06_0380 + 22937941-22937984,22939375-22941481
Length = 716
Score = 36.3 bits (80), Expect = 0.015
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -1
Query: 464 RHRSVPLFAIISVCCVDLFNGYLARSHWKRVQVSW*YTV-IPPLNFRAVYHVGLLIPSPE 288
RHRS P CV+L N AR W+ + W + LN A +HV L E
Sbjct: 626 RHRSRPALTTARKVCVELLNIPEARDRWELIAAVWTEILCYMALNCGATFHVKHLTTGGE 685
Query: 287 ILSDFPSDTFNKGVQLAKVIRQPHQLIPVPP 195
L+ F ++L +++ P + I +PP
Sbjct: 686 FLTQAKMLLF--VIRLPFLMKSPLEGIIMPP 714
>04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047
Length = 377
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 51 VKMSEYWVISAPVRPELCSRLGE 119
+K YWV+ AP R + C R+G+
Sbjct: 1 MKQRVYWVVQAPARGQACVRVGK 23
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 395 ARSHWKRVQVSW*YTVIPPLNFRAVYHVGLLIPSPEILS 279
AR KR + SW P NFRA+ IPSP ++
Sbjct: 43 ARRSRKRTRASWRTVTTDPSNFRAMVQEFTGIPSPPFVA 81
>02_05_0544 +
29876337-29876524,29876850-29876882,29878390-29878577,
29879755-29879811,29879909-29880061,29880812-29881278,
29881477-29881635,29881718-29881834,29881966-29882117,
29883436-29883530,29883619-29884525,29884604-29884688,
29884775-29884843,29885045-29885224,29885367-29885495
Length = 992
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = -1
Query: 302 IPSPEILSDFPSDTFN-KGVQLAKVIRQPHQ-------LIPVPPPLNTGIG 174
IPS ++ D P D FN +G+ + ++ + + P+PPP+N G
Sbjct: 138 IPSANVVMDRPQDPFNSRGIAVPPAVKMRNMAGNNSPWIDPLPPPMNARNG 188
>07_03_0956 -
22869166-22871145,22871800-22871959,22872311-22872375,
22872464-22872529,22872634-22872691,22872834-22872925,
22873093-22873332
Length = 886
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 453 CPTVCYNIRMLRRSV*WILG-QVPLETCPSKLVVHCYSAIKFS-CSLSRWSSNTLTRNIE 280
C YNIR R V +L + PL P K+ V Y A S C S+ S+ TL + +E
Sbjct: 798 CAHPDYNIRPSIRQVISVLKFEAPLPDLPPKMPVAMYFAPPISLCRFSQSSNGTL-KELE 856
Query: 279 R 277
R
Sbjct: 857 R 857
>05_03_0483 + 14585581-14587977
Length = 798
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 357 LPTYLDTFPVGPGQVSIKQIY--ATYGYYSKQ 446
+ Y +FP+ PG++ ++ + YGYY+ +
Sbjct: 49 ISNYTYSFPISPGRIFVRLYFYPVAYGYYASE 80
>07_03_1495 + 26983415-26984797
Length = 460
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 193 GGGTGINWWGCLMTLASWTPLLKVSLGKSLNISGEGIRRPT 315
GGG G + G L TL S + + + + L G G+RR T
Sbjct: 50 GGGGGWGFGGLLKTLTSQSETVLEAYRRDLAEFGTGLRRET 90
>06_01_1115 - 9186521-9187000
Length = 159
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 190 KGGGTGINWWGCLMTLASWTPLLKVSLGKSLNISGEGI 303
+GGG G WGC A L L + + SGEG+
Sbjct: 97 RGGGAGRRGWGCRWRAAHMALPLGGVLERGQDDSGEGM 134
>05_03_0100 + 8391700-8392390,8392531-8392812,8393767-8394317
Length = 507
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 129 CLRVPQVCCTVLVAQVRLSP-SIPTFSQLEF 40
CLR+ ++ C V++A + L P S+ F++ F
Sbjct: 421 CLRIVKLTCQVVIAIIHLKPSSLKDFNESNF 451
>03_01_0072 + 590008-590077,590284-590315,591874-592506
Length = 244
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 193 GGGTGINWWGCLMTLASWTP 252
G G+G WW + A WTP
Sbjct: 194 GNGSGWLWWARVRMAAEWTP 213
>01_06_1698 -
39264075-39264468,39264545-39264696,39264780-39264830,
39264946-39265122,39265256-39265348,39265489-39265555,
39265695-39265768,39266007-39266088,39266182-39266255,
39266354-39266383,39266475-39266534,39267524-39268225
Length = 651
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 210 DPSSPTFKYRYWG 172
DPS P ++Y YWG
Sbjct: 549 DPSKPMYRYDYWG 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,384,456
Number of Sequences: 37544
Number of extensions: 400206
Number of successful extensions: 967
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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