Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B04
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) ...    48   3e-06
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ...    29   2.5  
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide...    25   2.8  
At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to a...    28   4.4  

>At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) /
           V-ATPase C subunit / vacuolar proton pump C subunit
           (DET3) identical to vacuolar ATP synthase subunit C
           SP:Q9SDS7 from [Arabidopsis thaliana]
          Length = 375

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
 Frame = +3

Query: 60  SEYWVISAPVRPE---LCSRLGEPLNNGHKSGQPPVSNY*FPNTCI*RWGNWDQLVGLSD 230
           S YWV+S PV+     L +RL E ++    S   PV  +  PN    R G  D L+ L D
Sbjct: 3   SRYWVVSLPVKDSASSLWNRLQEQISK--HSFDTPVYRFNIPNL---RVGTLDSLLALGD 57

Query: 231 DLGKLDTFVEGVTRKV 278
           DL K ++FVEGV++K+
Sbjct: 58  DLLKSNSFVEGVSQKI 73


>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 917

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -3

Query: 372 PSKLVVHCYSAIKFSCSLSRWSSNTLTRNIERLS**HLQQRCPACQGHQTTPPIDPSSPT 193
           PS++ +   + ++FSC      + TLTR   +     LQ+  P  Q    T P  P S  
Sbjct: 135 PSEVDIAALTLLQFSCDRRHPQTQTLTRPQPQTHKTQLQRPPPQLQSQTQTAP--PKSDL 192

Query: 192 FK 187
           FK
Sbjct: 193 FK 194


>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
           identical to RNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|8248473|gb|AAF74208
          Length = 1196

 Score = 25.0 bits (52), Expect(2) = 2.8
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 385 WDLAK---YPLNRSTQHTDIIANSGTDRCRLEG*ISSVQSSQGHLP 513
           WD+ +   Y LNR    TD+     T  C  +G  +++  S G  P
Sbjct: 685 WDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNTAAIMLSAGFKP 730



 Score = 21.8 bits (44), Expect(2) = 2.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 295 EGIRRPT**TARKFNGGITVYYQLTWTRFQ 384
           +GIR     + +KF    T+    +WTRFQ
Sbjct: 633 DGIRLALRDSMKKFFSKHTILEICSWTRFQ 662


>At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to
           alpha-expansin 4 precursor GI:16923355 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 263

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 56  NVGILGDKRTCATRTVQQTWGTLKQ-WPQIWATSSV 160
           NVG  GD +    +  +  W T+K+ W Q W TS+V
Sbjct: 188 NVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTV 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,950,684
Number of Sequences: 28952
Number of extensions: 309684
Number of successful extensions: 808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)