Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B03
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    31   0.84 
06_01_1013 - 7931756-7935109                                           29   2.6  
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    29   4.5  
08_01_0914 + 9010613-9013316,9013537-9013748                           28   5.9  
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   7.8  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   7.8  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    28   7.8  
01_06_0693 - 31280108-31281271                                         28   7.8  

>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 672 IGVLLPIVSDKVNCLFIVEINFLAIRFELPFCRDCTKVLSKMSKNR 535
           +G+ + +V D   CL +++   L  R++   C   T+ L+ + +NR
Sbjct: 14  VGMKVLVVDDDPTCLAVLKRMLLECRYDATTCSQATRALTMLRENR 59


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 659 CQ*FPTKLIACSSWKSIFLPYDSNCLS-VGTVRKSCQKCPRTVLLRSSLRCVDCSCP 492
           C+  P K+ AC   K+  L   ++CL  + T  K C K     + R  + C +  CP
Sbjct: 404 CELMPGKVTACHCGKTRLLEKRASCLDPIPTCDKVCDKKLPCGVHRCKVTCHEGDCP 460


>01_03_0256 +
           14288885-14288936,14289362-14291335,14291648-14291673,
           14291855-14292025,14292560-14292647,14292711-14292802,
           14292920-14293384,14293860-14294633,14294890-14295087,
           14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
 Frame = +2

Query: 233 EDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIP 412
           + I F+SY +     +P WW +E   N      EIY        +  Y++RL    G+  
Sbjct: 281 QSIPFSSYIWR-RGTIPIWWGAE-IKNAVSVEAEIYVADDPFNGSLQYYQRLGRRYGNKS 338

Query: 413 -EFSWYSPIKTGYYPLMTSYYFPFAQ-RPDNYNLHSVK-NYEAIRFLDIFDKTFVQ 571
            E +  S  K G  P++      +   +P+   + S K + E +R      KT++Q
Sbjct: 339 LEVNATSQKKPGVVPIVCVNLLRYGDGKPETVLVDSFKSSLEYLRSTKKLGKTWIQ 394


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 169 IHILLFLFYNSIINSLCIVKNTVLHFSAINLK*SVHINEELWIN 38
           +H+L+F    ++I+S+C +  T   F    +K +V  NE L++N
Sbjct: 656 LHVLIFCIVGTLISSMCCM--TAYCFIKRKMKLNVVDNENLFLN 697


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 86  RTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE--QRLTYLTEDIGFN 250
           R   Q G + D   I YGI     +++Y+   S+  +  NE+     T  +ED+G N
Sbjct: 284 RIHRQKGHVEDHLYI-YGIASTYTRWIYHGEQSDAGINENEDHLDEHTSFSEDVGIN 339


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 539 TVLLRSSLRCVDCSCPAFERMG 474
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 209 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 322
           E+ + +    IG   Y  Y   + PF       GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318


>01_06_0693 - 31280108-31281271
          Length = 387

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 53  FVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF-----LYNNEEQR 217
           ++ MDT+  ++R  +++G+  D +A+N  +VK   Q ++  +    F     +Y  E   
Sbjct: 196 YMYMDTVSALFRQMLEEGVPPDTRALNV-LVKGYAQSLHLNDALRVFHQMRPVYGCEPDA 254

Query: 218 LTY 226
           LTY
Sbjct: 255 LTY 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,349,730
Number of Sequences: 37544
Number of extensions: 339353
Number of successful extensions: 865
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)