Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B03
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z95623-2|CAB09134.1|  509|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z48717-9|CAA88611.1|  509|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   5.3  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   5.3  
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    27   9.2  
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    27   9.2  

>Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H4.2a protein.
          Length = 225

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 227 LTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRY 373
           L +D  ++ YYY+   +   ++ S RY    +     Y+N Y    TRY
Sbjct: 71  LYDDYWYDKYYYFSPLYRSTYYPSRRYSYSDYLPNPYYWNNYGSYWTRY 119


>Z95623-2|CAB09134.1|  509|Caenorhabditis elegans Hypothetical
           protein T10B9.4 protein.
          Length = 509

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 509 HSVKNYEAIRFLDIFDKTFVQSLQKGNSNRMARKLISTMNRQLTLSETIGK 661
           H V+  EA  ++D+F     +    G SN    K  S  NRQLT  E I +
Sbjct: 263 HGVEPGEAADYIDMFLNARAEVEHFGESNDEFHKSSSYNNRQLTTQEIISQ 313


>Z48717-9|CAA88611.1|  509|Caenorhabditis elegans Hypothetical
           protein T10B9.4 protein.
          Length = 509

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 509 HSVKNYEAIRFLDIFDKTFVQSLQKGNSNRMARKLISTMNRQLTLSETIGK 661
           H V+  EA  ++D+F     +    G SN    K  S  NRQLT  E I +
Sbjct: 263 HGVEPGEAADYIDMFLNARAEVEHFGESNDEFHKSSSYNNRQLTTQEIISQ 313


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 632 ACSSWKSIFLPYDSNCLSVGTVRKSCQKCPRTVL---LRSSLRCVDCSCPAFE 483
           AC + K+IF+ Y+S C +    ++ C      V+    ++  +C D  CP++E
Sbjct: 493 ACMAQKNIFVKYNSACEACKLKKEKCDFYSACVVGENEKAECKCPD-DCPSYE 544


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 632 ACSSWKSIFLPYDSNCLSVGTVRKSCQKCPRTVL---LRSSLRCVDCSCPAFE 483
           AC + K+IF+ Y+S C +    ++ C      V+    ++  +C D  CP++E
Sbjct: 501 ACMAQKNIFVKYNSACEACKLKKEKCDFYSACVVGENEKAECKCPD-DCPSYE 552


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 590 NCLSVGTVRKSCQKCPRT 537
           NCL V T+R  C+KC  T
Sbjct: 54  NCLIVSTIRNMCKKCRYT 71


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 275 HLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYY 376
           HLPF +    +  + H R EI+YN    + + Y+
Sbjct: 264 HLPFQYELVDHDKMYHHRTEIWYNNDMSIGSSYH 297


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 590 NCLSVGTVRKSCQKCPRT 537
           NCL V T+R  C+KC  T
Sbjct: 46  NCLIVSTIRNMCKKCRYT 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,461,243
Number of Sequences: 27780
Number of extensions: 328984
Number of successful extensions: 893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)