Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_B03
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    32   0.40 
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    31   0.53 
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00...    31   0.70 
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.93 
At3g62160.1 68416.m06984 transferase family protein low similari...    29   2.8  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    29   3.8  
At2g16300.1 68415.m01866 F-box family protein contains Pfam:PF00...    29   3.8  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    28   6.6  
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ...    28   6.6  

>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = +2

Query: 170 YANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY---GNLKHRR--GE 334
           Y + SN FL+ +   +L+ + +   F   + +F+  LP W+ S  Y    + K  +  GE
Sbjct: 145 YLDLSNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLKVLSFKSNKLSGE 204

Query: 335 IYYNFYQQLTTRYYFERLTNGLGSIPE 415
           ++ +     T  Y   R  +  GS+P+
Sbjct: 205 LHSSLLSLSTIEYIDLRANSLSGSLPD 231


>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 114 TMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 209
           T+QR+ + E+ K+    C++P +PT +FT  K
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFTYTK 553


>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 568

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 75  LRFIALKCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 209
           L F+  + K V  T+QRL + E+ K+    C+ P  P+ +FT M+
Sbjct: 507 LAFVWKETKVVI-TLQRLNLTEILKKGLGSCVPPLPPSKNFTYMR 550


>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 454 GIVTSLNRRVPREFRYGTQAVCKT 383
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 451 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 362
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 392  NGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFD 556
            +GL +IP  +W +  +TG    +   + P     D      V NYE    L+ FD
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFD 1058


>At2g16300.1 68415.m01866 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 322

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 629 CSSWKSIFLPYD-SNCLSVGT 570
           CSSW+S+  P D S CLS+ T
Sbjct: 32  CSSWRSVVPPQDQSRCLSIKT 52


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +2

Query: 317 KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 493
           K  +G     F ++ +    F   + G   +    WY+P+  GY   + ++++P    P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYPMPLPP 444


>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
           SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
           Zea mays
          Length = 472

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 32  YEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANY 181
           Y++  +F V     +  YR K+   +    ++ N  +VK E+  VY ANY
Sbjct: 188 YKMAEEFLVTSHGNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANY 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,740
Number of Sequences: 28952
Number of extensions: 297434
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)