Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A23
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    29   1.5  
At4g10890.1 68417.m01772 expressed protein                             29   2.0  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    27   4.7  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   4.7  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   4.7  
At3g12955.1 68416.m01614 auxin-responsive protein-related simila...    27   6.2  

>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 123 EPALSTLICSK*NCRPTSTLTEEH 52
           EP+ S L+C K +C   ST TE H
Sbjct: 390 EPSASQLLCQKCHCAVKSTSTENH 413


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 271 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 387
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 344 RRLDTALVLTVNMSSSDPPTLLQWLGGQLPGNQRKK 451
           R LD A+  T    +SD PTL   L G+ P N  KK
Sbjct: 215 RALDVAVNGTKRRRTSDSPTLPNKLDGKNPSNILKK 250


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 308 HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 174
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 326 RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 436
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At3g12955.1 68416.m01614 auxin-responsive protein-related similar
           to indole-3-acetic acid induced protein arg7 (SP:P32295)
           [Vigna radiata]
          Length = 139

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 17  VKRRFNIKILSRCSSVSVEVGRQFYFEQIR 106
           +K+   + +L RC SVS ++GR + +  +R
Sbjct: 2   IKKMRLMMMLRRCKSVSTQLGRSYSYTSLR 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,244,948
Number of Sequences: 28952
Number of extensions: 171732
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)