Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A21
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   1.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   3.5  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.5  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   4.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   4.6  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   8.1  

>SPBC23E6.09 |ssn6||transcriptional corepressor
          Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 62 SPLHASSPGLPPAH 21
          SPLHA+S  LPP+H
Sbjct: 43 SPLHANSVSLPPSH 56


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 232 CSHYFRLLLYFLSMVCTRKRSY 167
           CS    LL+ FL+MVC+ K  Y
Sbjct: 872 CSDVLYLLMEFLNMVCSPKSYY 893


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 190 VCTRKRSYIRRGCSLCRNISVRN*QIQPLRKC 95
           V TR+R  + R C +CR   ++   ++P + C
Sbjct: 20  VATRRRR-VTRACDMCRRKKIKCDGLRPCKNC 50


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 213 YYCTSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTHFIHEGSTG 64
           +YC +  W   +N   Y G +  A +F+S+   S  Y+   + +   S G
Sbjct: 524 WYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTVDVFSRG 573


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 112  GSVSYGPKYCGTRNIPGVYTNVYEYIPWIRSTII 213
            G+VS    YC   + PG  + V+  IP+  S+ +
Sbjct: 1072 GNVSLTVGYCSAEHGPGSTSKVFSRIPYSASSTV 1105


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 114 ICQLRTEILRHKEHPRRIYERLRVHTMDKKYN 209
           IC L   +  H  HP  IY   R+  + K YN
Sbjct: 78  ICSLFLSLKYHHLHPEYIYS--RISKLGKSYN 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,616
Number of Sequences: 5004
Number of extensions: 37810
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)