Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_A21
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 29 2.0
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 3.5
10_08_0650 - 19591898-19593148 28 4.6
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567... 28 4.6
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 28 4.6
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532... 27 6.1
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 27 8.1
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 27 8.1
07_03_0862 + 22075395-22075714,22075716-22076307 27 8.1
06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691... 27 8.1
04_04_0267 + 24048649-24049140,24049521-24049835 27 8.1
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -2
Query: 198 YPWYVLVNVRIYAGDVP-------CAAIFRSVTDRSNHYESVTHFI 82
+PW ++R++ GD P CA FR V+D S H H +
Sbjct: 1152 WPWARTEHLRVHTGDRPYVCHEPGCAQTFRFVSDFSRHKRKTGHSV 1197
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 107 ITKVLPTSYMRGPPESPLHASSPGLPPAHS 18
+ ++ T +RG P +P+ SSP L P +S
Sbjct: 999 LARMKHTGMLRGGPSTPMLVSSPSLNPVYS 1028
>10_08_0650 - 19591898-19593148
Length = 416
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 118 QIQPLRKCYPLHT*GVHRSRPCTRLHRVY 32
Q+ P R C+PL G HR R RVY
Sbjct: 289 QVVPRRSCFPLLAGGRHRRRRLRFTSRVY 317
>07_03_1395 -
26255776-26256043,26256194-26256414,26256550-26256786,
26257476-26257776,26258027-26258106
Length = 368
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 73 PLMYEVGNTFVMVGSVSYGPKYCGT--RNIPGVYTNVY 180
P Y + N V V + YGP CG+ +P N+Y
Sbjct: 242 PFPYSMLNYTVTVTQIKYGPYICGSVVGMVPDALVNIY 279
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 116 DPTITKVLPTSYMRGPPESPLHASSPGLPPA 24
D T+ L T PP+SP A+ P LP A
Sbjct: 307 DMTVIDTLSTHSAAPPPDSPSTAAPPSLPSA 337
>05_05_0165 +
22851863-22852566,22852811-22852964,22853112-22853261,
22853769-22853930,22854070-22854242,22854330-22854396,
22854556-22854722,22855216-22855374,22856187-22856276,
22856392-22856483,22856587-22856681,22857328-22857405,
22858364-22858459,22859132-22859206,22859290-22859381,
22859462-22859624,22859734-22859794,22860016-22860116,
22860567-22860614
Length = 908
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 372 VVVVIRGVFTYSAGCVAQTGGRFQGTPSDLSDTY 473
+ +++R + YS CV+ GGR + T +++D +
Sbjct: 594 ISLILRSI-DYSISCVSAAGGRLECTMQNIADNF 626
>10_08_0573 + 18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 115 SVSYGPKYCGTRNIPGV-YTNVYEYIPWI 198
+V P +CG RN P + + NV E WI
Sbjct: 1137 TVEGSPNFCGLRNFPSLTHVNVTESGEWI 1165
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -2
Query: 204 TSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTHFIHEGSTG 64
T Y WY + R+ D+P + V + S+H ++ F+++ G
Sbjct: 512 TDYLWYT-TSFRLETDDLPYRKEVKPVLEVSSHGHAIVAFVNDAFVG 557
>07_03_0862 + 22075395-22075714,22075716-22076307
Length = 303
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -2
Query: 147 CAAIFRSVT-DRSNHYESVTHF--IHEGSTGVAPARVFTGFTTRTQL 16
C +F ++ +R H ++ E GV R GFTTRTQL
Sbjct: 153 CEMVFFTIDLERDEHMSNIAILEEAEEDMVGVFSLRTDLGFTTRTQL 199
>06_01_0898 +
6908826-6908974,6909059-6909428,6909510-6909929,
6910017-6910315,6910390-6910648,6910732-6911041,
6911126-6911251,6911373-6911417,6911652-6911702,
6912041-6912153
Length = 713
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +1
Query: 31 GKPGEDACRGDSGGPLMYEVGNTFVMVGSVSYGPKYCGTRNIPGVYTNVYEYIPW 195
G P + C PL +GN F+ GS G G++ P + PW
Sbjct: 615 GPPMQGTCAPRPHVPLGVSIGNEFIPGGSTGVGSSAQGSQTTPTSDCHGKRRKPW 669
>04_04_0267 + 24048649-24049140,24049521-24049835
Length = 268
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 149 LVPQYFG--P*LTDPTITKVLPTSYMRGPPESPLHA 48
LV QYF T+P + + LP+ G P SPL A
Sbjct: 207 LVTQYFQCVDGFTEPEVVRKLPSDAAGGKPASPLDA 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,216,908
Number of Sequences: 37544
Number of extensions: 265023
Number of successful extensions: 868
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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