Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A21
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   0.42 
At2g33780.1 68415.m04143 VQ motif-containing protein contains PF...    29   2.2  
At3g09780.1 68416.m01161 protein kinase family protein contains ...    28   3.9  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    27   5.1  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    27   5.1  
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein...    27   6.8  
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /...    27   6.8  
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    27   9.0  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 92  PTSYMRGPPESPLHASSPGLPPAHSC 15
           P  +   PP SP+H SSP  PP+  C
Sbjct: 675 PEVHYHSPPPSPVHYSSPPPPPSAPC 700



 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 92  PTSYMRGPPESPLHASSPGLPPAH 21
           P  Y   PP  P+H SSP  P  H
Sbjct: 655 PVYYSSPPPPPPVHYSSPPPPEVH 678


>At2g33780.1 68415.m04143 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 204

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 119 TDPTITKVLPTSYMRGPPESPLHASSPGLPPAHS 18
           TDP+  K +    + G P++P H   P  PP HS
Sbjct: 41  TDPSSFKQV-VQLLTGIPKNPTHQPDPRFPPFHS 73


>At3g09780.1 68416.m01161 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 775

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -1

Query: 232 CSHYFRLLLYFLSMVCTRKRSYIRRGCSLCRNIS 131
           CSH F     FLS  CT     I   CSLC+N S
Sbjct: 388 CSHGF-----FLSSSCTANSDRICTPCSLCQNSS 416


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -3

Query: 161 PGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCS 12
           P   L P  + P  + P  +          PP   +H SSP  PP H  S
Sbjct: 416 PSPPLPPPVYSPPPSPPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSS 465


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 472 YVSLRSLGVP*NLPPVCATHP 410
           YVSL  L VP N PP C   P
Sbjct: 46  YVSLPPLSVPGNAPPFCINPP 66


>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
           low similarity to SP|P25583 Karyogamy protein KAR4
           {Saccharomyces cerevisiae},
           (N6-adenosine)-methyltransferase [Mus musculus]
           GI:10179948; contains Pfam profile PF05063: MT-A70
           (S-adenosylmethionine-binding subunit of human mRNA:m6A
           methyl-transferase (MTase))
          Length = 775

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 92  PTSYMRGPPESPLHASSPGLPPAHSCSL 9
           P + +  PP SP+H+ +PG+ P    S+
Sbjct: 431 PFANLGMPPPSPIHSLTPGMSPIPGTSV 458


>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
           gibberellin-responsive modulator identical to GB:Y11336,
           member of SCARECROW family
          Length = 587

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 168 IYAGDVPCAAIFRSVTDRSNHYESVTHFIHE-GSTGVAPARVFTGFTTRTQLLLS 7
           +Y G   C  +     DR   +E+++ + +  GS+G+APA + +    +  +LLS
Sbjct: 494 VYLGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLS 548


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 113 PTITKVLPTSYMRGPPESPLH-ASSPGLPPAH 21
           P+   + P +  + PP  P H +SSP  PP H
Sbjct: 143 PSTPSLPPPTPKKSPPPPPSHHSSSPSNPPHH 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,346,486
Number of Sequences: 28952
Number of extensions: 206368
Number of successful extensions: 669
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)