Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A19
         (80 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   2.4  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   2.4  
U39855-2|AAA81081.2|  355|Caenorhabditis elegans G protein, alph...    25   9.6  
AY008134-1|AAG32087.1|  355|Caenorhabditis elegans heterotrimeri...    25   9.6  

>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 79   LLDSLFHFTKLFLQTLTTD 23
            L  SL HF+K+ +QT+TTD
Sbjct: 1683 LAASLTHFSKMNIQTMTTD 1701


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 79   LLDSLFHFTKLFLQTLTTD 23
            L  SL HF+K+ +QT+TTD
Sbjct: 1683 LAASLTHFSKMNIQTMTTD 1701


>U39855-2|AAA81081.2|  355|Caenorhabditis elegans G protein, alpha
           subunit protein 12 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 57  SLNYFFRHSPRITISV*YP 1
           S  YFF H PRI +   YP
Sbjct: 152 SCQYFFEHIPRIAMPDFYP 170


>AY008134-1|AAG32087.1|  355|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 57  SLNYFFRHSPRITISV*YP 1
           S  YFF H PRI +   YP
Sbjct: 152 SCQYFFEHIPRIAMPDFYP 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,511
Number of Sequences: 27780
Number of extensions: 6917
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 12,740,198
effective HSP length: 8
effective length of database: 12,517,958
effective search space used: 225323244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)