Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A18
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   0.96 
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   3.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   6.8  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    24   9.0  

>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 304 NQRRPASDFSFAPTSVVFKKD*P--GIVVNK 218
           N  RPAS  SF+P+S+  K   P  G+ VNK
Sbjct: 66  NHFRPASSLSFSPSSLSRKDSGPGDGLEVNK 96


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 34  YAENLEDNRFLPVGNSFSGRRNSL-HEILYFIIHATAG 144
           YAE++  NR+L   N+ SGRRN   + +  F + A +G
Sbjct: 34  YAEHVPLNRYLTQWNN-SGRRNGFSNNVELFNLEARSG 70


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 25   LNHYAENLEDNRFLPVGNSFSGRRNSLHEILYFIIHATAGYCFNIQHN 168
            L HY +NL   +F+PV    + R   ++E   F    T+  C+N+  N
Sbjct: 2288 LQHYLQNLPCKKFIPVFYQLAAR--LMNENSKFQQSLTS-ICYNVGRN 2332


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 358  CKFSFLHTMSCRDDMLRANQRRPASDFSFAPTSVVFKKD*P 236
            C FS+ H    R   LRA+    +   SF     VF+ + P
Sbjct: 2189 CMFSYSHNYGSRRCRLRADNSNWSEPVSFDAIGSVFEVELP 2229


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 82  FSGRRNSLHEILYFIIHATAGYCFNIQHNCQHKRRR 189
           FS R  SL+ +L+++I     Y F +  + +  +RR
Sbjct: 269 FSLRTRSLNNVLFWVIQFFVPYLFTLILDAKALKRR 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,360,680
Number of Sequences: 5004
Number of extensions: 24009
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)