Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A18
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059...    29   0.90 
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    29   0.90 
04_04_0127 + 22957203-22957420,22957552-22957675,22957784-22958002     28   2.1  
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325...    27   4.8  
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446...    27   6.3  
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803...    26   8.4  

>08_02_1240 +
           25504789-25504794,25505421-25505555,25505854-25505964,
           25506091-25506183,25506264-25506884,25506970-25507143,
           25507239-25507464,25507560-25507651,25507744-25507842,
           25507936-25507984,25508071-25508124,25508312-25508484,
           25508561-25508632,25508713-25508808,25509032-25509048,
           25509704-25509875,25509973-25510071,25510381-25510484,
           25510940-25511126,25511212-25511220
          Length = 862

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 76  NSFSGRRNSLHEILYFIIHATAGYCFNIQHNCQHKRRRF 192
           +SF G  N  HE+  F++     Y F++ H  + K+  F
Sbjct: 687 SSFGGSFNFGHEVSNFVVSVFCRYLFHLSHPSKSKKHYF 725


>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 76  NSFSGRRNSLHEILYFIIHATAGYCFNIQHNCQHKRRRF 192
           +SF G  N  HE+  F++     Y F++ H  + K+  F
Sbjct: 762 SSFGGSFNFGHEVSNFVVSVFCRYLFHLSHPSKSKKHYF 800


>04_04_0127 + 22957203-22957420,22957552-22957675,22957784-22958002
          Length = 186

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 375 SRATKLVNLAFFTQ*AAVMTCFELISVAPHLISVLRPRL*YSR 247
           ++ + L +  FF    AV+  + ++S+   ++ +LRPR  YSR
Sbjct: 64  AKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRPRARYSR 106


>10_08_0877 +
           21230447-21230815,21231855-21232208,21232417-21232504,
           21232844-21233268,21233477-21233632,21233849-21234016,
           21234170-21234310,21234393-21234629,21234710-21234823,
           21235096-21235272
          Length = 742

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 40  ENLEDNRFLPVGNSFSGRRNSLHEILYFIIHATAGYCFNIQHNCQ 174
           E+LE +  L     +  R N L  ILY    A +GY       C+
Sbjct: 395 EDLEYSNLLDRAYEYGSRGNGLMRILYVAAFAVSGYASTDSRPCK 439


>02_04_0090 -
           19643182-19643322,19644192-19644335,19644563-19644626,
           19644710-19644796,19645371-19645513,19645706-19645771,
           19645954-19646046,19646165-19646230,19646363-19646433,
           19646882-19646982,19647217-19647317,19647421-19647528,
           19647639-19648064
          Length = 536

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 100 SLHEILYFIIHATAGYCFNIQHNCQHKRRR 189
           S ++ +YF++H    Y FN   +  + RRR
Sbjct: 238 SSYQQIYFVVHNNISYVFNRYLDADYYRRR 267


>02_05_0970 -
           33179180-33179210,33179297-33179441,33180307-33180362,
           33180650-33180691,33180814-33180866,33181059-33181490,
           33181630-33181707,33181785-33181870,33183588-33183689,
           33183754-33183960,33184976-33185336,33185463-33185626,
           33185709-33185817,33186468-33186485
          Length = 627

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 25  LNHYAENLEDNRFLPVGNSFSGRRNSL 105
           LN+ A NL+D+   P   SFSG+  S+
Sbjct: 9   LNNSASNLQDSTGRPFTGSFSGQSGSV 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,694,681
Number of Sequences: 37544
Number of extensions: 150833
Number of successful extensions: 349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)