Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A17
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.76 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.1  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 276 ISNACKTPDDKP 311
           ++NACK  DDKP
Sbjct: 392 LTNACKKKDDKP 403


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 312 PVYRLESYKRLKW 274
           P YRLE  KRL W
Sbjct: 333 PKYRLELQKRLPW 345


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 364 IRPERVKWITFDNPF 408
           I PER ++I F  PF
Sbjct: 525 INPERAEFIEFSKPF 539


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 258 VYYSHNHIVSLLKVSYPQLFCFY 190
           ++Y+ N IV  + +SY  +  FY
Sbjct: 236 LFYTVNLIVPCVSISYLSVLAFY 258


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 255 YYSHNHIVSLLKVSYPQLFCF 193
           YYS+  +++L+  S P   C+
Sbjct: 640 YYSYIGVLTLVATSMPTYICY 660


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 356 HISNMLTVVQTDT 318
           H+S+++ V++TDT
Sbjct: 13  HMSDVIEVIETDT 25


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 356 HISNMLTVVQTDT 318
           H+S+++ V++TDT
Sbjct: 13  HMSDVIEVIETDT 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,483
Number of Sequences: 438
Number of extensions: 2203
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)