Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A16
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)              28   7.4  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.7  
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)               27   9.7  
SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)                    27   9.7  

>SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 382 NEKATIRVCARMRSTKLGKRHHNQRRL 302
           N++ +   CA  +S KLG R H QR++
Sbjct: 247 NKRLSSVTCAFDKSNKLGNRRHGQRKM 273


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 34  CSADGWKVLGDAERPERHIQRCITLGA 114
           C    W+ + +  RPE+H+ RC  LG+
Sbjct: 483 CQQKYWEAVSNP-RPEQHVPRCTNLGS 508


>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
          Length = 1063

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 96  MHHSGRQHSQRPCA*VMADTERGNSQNCFPTSKIASEFSFENITE 230
           + H  R  SQRPC  ++ D++  +     P+S+  S    E++ E
Sbjct: 635 LRHKRRSISQRPCPDIVDDSDDESETTSRPSSRQQSMSETESVHE 679


>SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)
          Length = 642

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 96  MHHSGRQHSQRPCA*VMADTERGNSQNCFPTSKIASEFSFENITE 230
           + H  R  SQRPC  ++ D++  +     P+S+  S    E++ E
Sbjct: 490 LRHKRRSISQRPCPDIVDDSDDESETTSRPSSRQQSMSETESVHE 534


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,996,252
Number of Sequences: 59808
Number of extensions: 392175
Number of successful extensions: 995
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)