Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A16
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical ...    31   0.70 
AL032625-5|CAH60795.1|  498|Caenorhabditis elegans Hypothetical ...    28   4.9  
AL032625-3|CAB63349.1|  514|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U28738-12|AAK68400.1|  189|Caenorhabditis elegans Sr protein (sp...    28   6.5  

>AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical
           protein Y38H6A.1 protein.
          Length = 218

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 334 ALYYACAHKHVLSLFRFMDYQTTTMLKKFIRFLKISLLTRV 456
           A  YACA K+   +     Y+  T++ KF RFL   + +++
Sbjct: 168 AKQYACAIKYAPQVVTVTGYKCATVIDKFFRFLSFFIFSQI 208


>AL032625-5|CAH60795.1|  498|Caenorhabditis elegans Hypothetical
           protein Y37H9A.1b protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 332 WEKASQPEAALALVAPVCNQYSGAFSRRAVKMEYFSYIFKRKFG 201
           W +  +     AL+  V ++YS  FS  +  + YFS +F+  +G
Sbjct: 148 WLEFQKSPRYSALLQRVLSKYSPDFSENSTILAYFSVLFEMDYG 191


>AL032625-3|CAB63349.1|  514|Caenorhabditis elegans Hypothetical
           protein Y37H9A.1a protein.
          Length = 514

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 332 WEKASQPEAALALVAPVCNQYSGAFSRRAVKMEYFSYIFKRKFG 201
           W +  +     AL+  V ++YS  FS  +  + YFS +F+  +G
Sbjct: 148 WLEFQKSPRYSALLQRVLSKYSPDFSENSTILAYFSVLFEMDYG 191


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
           protein C06B8.7 protein.
          Length = 3118

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 112 ANTLKDPAPELWP--TPSAVIVKIVSRHQKLHPNFRLKI*LKYSILT 246
           ANT+ DP P L P  TP A +V + S + K+H N       KY I T
Sbjct: 838 ANTVFDPFPSLPPRSTPYAALV-VSSSNVKIHRNCFNNERSKYEIAT 883


>U28738-12|AAK68400.1|  189|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform c protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 112 ANTLKDPAPELWPTPSAVIVKIVS 183
           AN L DP PE  P P    VK+V+
Sbjct: 65  ANVLADPVPEAPPDPDHQFVKVVA 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,205,628
Number of Sequences: 27780
Number of extensions: 299386
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)