Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A15
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.1  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   3.2  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   4.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   5.6  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   5.6  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   7.4  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        25   7.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   9.8  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 246  TSSAPSYINYSSKDNQTSANTLTVSGYRSGEDIVE 350
            TSS PSY N +    Q S N    S YR   +I E
Sbjct: 1611 TSSGPSYQNRTPLTGQESMNMGVYSPYRRSTEIAE 1645


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 504 RVSWKLYPIWYKNKVY 551
           R SW+ YP+W + K+Y
Sbjct: 308 RKSWETYPLWVQVKLY 323


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 414 RDELALKLELKTDYAGDRPSFGAGQTKTGP-RVSWKLY 524
           RD      EL   +  DRPS     + TGP  + W LY
Sbjct: 474 RDARGSSYELNRTFDADRPSVRPDISITGPIPIDWMLY 511


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 58  SALVTRVSLTPLCNNTAVSITSNDSPPFNNA 150
           S   T  S TPL +  + + TS  S PF N+
Sbjct: 544 STTATSASSTPLTSVNSTTATSASSTPFGNS 574



 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 43  ITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNAD 153
           +T V S   T  S TP  N+T  S  S  +  F N +
Sbjct: 555 LTSVNSTTATSASSTPFGNSTITSSASGSTGEFTNTN 591


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 381 FNEHPVLITNKRDELALKLELKTDYAGDRPSFGAGQTKTGPRVSWKLYPI 530
           FN +     N  D+  +++EL+ +     P F AGQTK    VS KL PI
Sbjct: 363 FNTNNAAEINPEDDEDVEIELREE----EPGFLAGQTK----VSLKLSPI 404


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 396 VLITNKRDELALKLELKTDYAG 461
           + I NKR   ALK  LK +Y G
Sbjct: 233 IAILNKRGPYALKYSLKPEYKG 254


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 240 EVTSSAPSYINYSS-KDNQTSANTLTVSGYRSG 335
           +V  S    I+ S  KDNQTSA+T +V+G+ +G
Sbjct: 341 QVKFSPADVISLSGCKDNQTSADT-SVNGFATG 372


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 234 NAEVTSSAPSY--INYSSKDNQTSANTLTVSGYRS 332
           +  V S   SY  + YS+KD+     T T SG+RS
Sbjct: 102 STRVPSKNSSYETLTYSAKDSSDDVFTETNSGFRS 136


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 161 CSYTIASSVSDYKAAVKTTFQL 226
           CS T+A++  +Y   + T FQL
Sbjct: 247 CSPTVATAAGEYGRCIGTAFQL 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,510
Number of Sequences: 5004
Number of extensions: 35063
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)