Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A15
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564...    30   1.4  
07_03_0897 - 22389116-22389600,22389611-22389728                       27   7.5  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    27   10.0 

>04_03_0998 -
           21555696-21556080,21556177-21556254,21556333-21556424,
           21556524-21556620,21557113-21557141,21557620-21557781,
           21557981-21558061,21558156-21558314,21558394-21558510,
           21558598-21558666,21558753-21558831,21560884-21561050,
           21561109-21561229,21561522-21561649,21562293-21562361,
           21562408-21562539,21562619-21562991,21563274-21563398,
           21563500-21563655,21563785-21564198,21564634-21564691,
           21566522-21566648,21568047-21568305,21569005-21569104,
           21569231-21569317,21569454-21569692,21569914-21569999,
           21570409-21570532,21571111-21574332
          Length = 2444

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = +3

Query: 261 SYINYSSKDNQTSANTLTVSGYRSGEDIVEVYFPIEFRLLFNEHPVLITNKRDELALKLE 440
           SY+ + + D Q    T+      S  D+V  + P     ++    V   N+R +L   L+
Sbjct: 107 SYLVFCNNDKQKMQKTVGFPDMASASDLVIQWTPPSVERVYTRRAVARRNQRAKLCSVLD 166

Query: 441 L-KTDYAGDRPSFGAGQTKTG 500
           L + D    R     GQ K G
Sbjct: 167 LERVDITSVRQRRDRGQHKYG 187


>07_03_0897 - 22389116-22389600,22389611-22389728
          Length = 200

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 46  TVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVICQ 189
           +V  S L  R +   L + TAVS+ S+ S PF +  P    ++S   Q
Sbjct: 52  SVDFSPLHRRGAAVVLSSRTAVSLLSSSSSPFAHQQPCRPYWSSSAAQ 99


>01_06_0946 +
           33220910-33222221,33223373-33223734,33223863-33224073,
           33224174-33224411,33224492-33224642,33224733-33224997,
           33231775-33231820,33232167-33232815,33232883-33233384,
           33235023-33235360,33235466-33235676,33235769-33235992,
           33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 43  ITVVLSALVTRVSLTPLCNNTAVSITSNDS 132
           + VV   LV ++S   +C N A SIT N +
Sbjct: 845 VNVVAQVLVAQLSQEQICINQAASITGNQT 874


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,459
Number of Sequences: 37544
Number of extensions: 222964
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)