Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A15
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_53566| Best HMM Match : Glycophorin_A (HMM E-Value=9.1)             30   1.1  
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         30   1.1  
SB_34249| Best HMM Match : fn3 (HMM E-Value=0)                         29   2.5  
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)                 28   4.4  
SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)                    28   5.8  
SB_53706| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 70  TRVSLTPLCNNTAVSITSNDSPPFNNAD 153
           T+ S TP+C + A   T+N SP  N++D
Sbjct: 570 TQSSATPMCQSGATDTTNNQSPAVNSSD 597


>SB_53566| Best HMM Match : Glycophorin_A (HMM E-Value=9.1)
          Length = 199

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 195 TRLLLKLPFN*KRNA---EVTSSAPSYINYSSKDNQTSANT 308
           TRL ++ P    RNA    VTS    Y N +S D+ +SAN+
Sbjct: 99  TRLDMRTPLKKTRNAPLERVTSDGRKYYNQTSSDSSSSANS 139


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 195  TRLLLKLPFN*KRNA---EVTSSAPSYINYSSKDNQTSANT 308
            TRL ++ P    RNA    VTS    Y N +S D+ +SAN+
Sbjct: 1452 TRLDMRTPLKKTRNAPLERVTSDGRKYYNQTSSDSSSSANS 1492


>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 2195

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 23/89 (25%), Positives = 37/89 (41%)
 Frame = +3

Query: 234  NAEVTSSAPSYINYSSKDNQTSANTLTVSGYRSGEDIVEVYFPIEFRLLFNEHPVLITNK 413
            N +V SS P  +  ++ D   +     +    +  D++  +   +     N  P L+T  
Sbjct: 1489 NEDVPSSPPLNVTLTANDTSINVTWQPIPEKNTNGDLLGYHVFYQESHTGNSTPCLVTVD 1548

Query: 414  RDELALKLELKTDYAGDRPSFGAGQTKTG 500
            R  LA++L   T Y G   S  AG T  G
Sbjct: 1549 RSSLAVQLLNLTPYTGYLVSV-AGFTAPG 1576


>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
          Length = 991

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 131 ESLEVIETAVLLHRGVSETRVTNALSTTVITNHFVVIDSCSRW 3
           + LE++ET    H G++  RV   L     T++ +V+D  SRW
Sbjct: 811 QQLEMLETIHEGHLGITN-RVGTDLFELEQTDYLIVVDYASRW 852


>SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)
          Length = 925

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 234 NAEVTSSAPSYINYSSKDNQTSANTLTVSGYRSGEDIVEVYFPI-EFRLLFNE 389
           + EV  SAP++I   +K  Q S +TL  +    G D  ++  P  E++ L N+
Sbjct: 417 HGEVKPSAPAWIESYNKHKQASRSTLDSNELYEGRDPEQISPPRGEYQELIND 469


>SB_53706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 527 RI*FPAHSRPGLRLTRTE*RSVASVIGLQFKLESK 423
           RI  P H+   L    TE  ++ASV GL FK E +
Sbjct: 287 RITIPCHNNHALAELPTEPPAIASVHGLDFKAEEE 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,335,646
Number of Sequences: 59808
Number of extensions: 274093
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)